G113066 (hipk2)


Basic Information

Item Value
gene id G113066
gene name hipk2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 23547797 ~ 23554739 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141619
GTGacttaaaacagtttaatgtaaATCCAAGACAAAGTGTGATTACATTTCTACACATATACAATATGCATATGTGAGCTTACAAATTCTGATTAATAACTCGATTCACCTCGGAGACCGAAAAAATGATCAAAAGTAACAGTGAATAACAAGCTATAACATAGTTCACCACGACGGGAGCCCCTTTCTCACCCTACAGTTagtaaatataacaattaaaataactatattcTTCTATAACGAATTTTCTGTTAAAATCTTCTGTAAATGTACAATGCTATCATTAGTTTGAAGACTAATATAAATTCACTCCATTTTTCTACAACGAAAATGATTATAAATAGAAGCACACAACGTCTTAATGGTAACACAAGCGTTTAGTAGCATGTACTCAAACGGttaagaatttaattatttcattatcatcatcatcatcataataataatttattattattattattattgttatttttaaaacattctatAAGCCAGTAAAATATCCATTCTCTTAACATACTTATAATATGAGACTAGGAATAGGATACATATATTTCTACATTATCAGATTGATAAGAGACGTTACACTTctttgcccccccaccccacccctccacaaaaaaaagcaaaaagacaTAACAGTGAAAGAAGAATACAAGGAAATACTGCTGCACACAATAGATTTCACAAGATAAACAAGAAATAACACTTCATACAGAAACCATACAGCAATggacacaaaaacaagcaaacaaacaaacaaacaaacaaaatggtcaGGGTTTGATGCAATCTAAGGTTGAGAGGAGTctgtagaaaaatattttgttctttgtattttttaagccatgtatttatttatatttaacagatTGCTAGAGAAAAACTACACAGCAGAACTGGGTGATGGGTGAAAAAAGGCCCAACTTTACAACCCACTTATAGTTTCCTTTTCATTAAGGGACATCATAAACCTCAGCAGGCATATGAAACACCATTAAGaagtttttcttcctctttcctttattttagtttttatttagatAAACAAGTGTATTCACAGTCAGGGAGCCCTGTGCACTAGTGACACATCTTTGGGGAACGGGCACTGCGAGTACCCATTAATTGCCACAAAAAGCTTTCTTactatttctaatttattactTTTCTGTTGTACACTTGTTTATTGAACTAACCCCTGCTGAGAGCACTGGGAGGAGAAGGTCATTGGATCCCACTCATACAAAAGGACACGAAGCTATGAAAACAGTGCGTTTTCAGCAAAatgctctttgtttttaatctattcATTTAGATTATTTTTGGTTCTCTTAAGAAAGGTGTAAGAATGACCAAATTACAACATTTGGCTTTGCATGTCCACAGATAGACAGGTGGCATCGTGGTATCAAACCCTAAGTCAGCCCCCTACCCTCCCTCCCAAGATGAGAACCAGTGAACAGAACAAGCAGAACACGAAAACCAAACGCACAcgtgcacatatacatacacacctccAAAAGTGTGTCAGAATGTGGAAGTATTGGTTTGCAAGGATCTGTAATGTTGCCAAGCAGTTCAAGTCATTTACTACACGTCTGCAAGAATGATACTTGCCAACCCCTTTGTTTGAATGGAGAATGTGCTTTTACAGTAATGTTTTCTGTACCGGTGCTTAAATATTCTGTGagaggattttgttttcttaaggtatcaaaagcttttttaagTAGTCACTTTCAATGGTTCGGCCTGAGACAACAAACTGGGTCCTAAGCACAAAGCTTTCAGGAATGttgcttaatttgtaaacaaagaaacaacacaagCGAAAAAACTACTGTTCAAATTGGCCACTAAATATAAAGATTCACTTTGTGGAAATGAttgaagtttattattatttatttattttttgtttagtttgtctgtttgtttgttttttccggCTTGAGTATTAAAAAGCTTTAGAAATACCAGGCTTTACAAATACACATGTTAAAACAGCACTCTTTAATTTATAGCATTCCTTAAAGCTTTGACTGTAAAGCTTATCGTTTTAAAGGCAGTATGTACTGTTTTTAAGGTGAAAGTGAAGGGGGTGGTGAAGTTGTTACTCAAGACTCAAAAATCACGGTttcattcctttaaaaaaaaagaaaaaaaagggggggttaCAAGTCATTTTTTTACAAAGAAAAGGAAGGGTCACACTTGTAAAGTTACATTTGGTAATTATAAGATTACTCAATCTAAATCGAAGGTAAATTGCTAATTCACCATTTCTGATAACgtcacactgaacacagcagtATAATGCAAATAGACGTTCAAATCTACAAAACGCAGTGATTACTTCAGATCTGATCTTTCTTCCAACATTCAAATACagaatcaataaaacaatattgagCATTGTAGGGTCAAAAGGGCTGCTCATAGCACTGTCAAAACCACTTAGTTCAATGAATTCACACAAGACAAATGtcccaacacaacacacaacgtATATCTCCTCTGTACATCCTCTGTCTTGCAAAAATTAGAGATGTCACAATATCATCAGAACACGAATGGCAAGCTGTTTGGCCTGGTGTGACAGTATTGCCTCTATAGTACTGCAGTGGTATTGCATATATAGTGGAAATGTCTATTAAATGTTACACAAGTGAGGAAACTCAGACCTGCTGTCTTTAGTACGAAGAGAAAAAGACCATTTTTTGACATAGTTTcaacatttacattcattttgtactagtgaaaaaaaattgaaagatcccattttaaatatatatatatatattttttttctctcattagTTCCAACAGTTCATTTCTATGGCACTAAAGCATGAGTTTACTTGTCTAAAAACTCTTTACTTATGTGCGACATAAGGTCATATGATGCACATGTGATAACAGTATATTAATTAAAGCCAGGaatactacaacaacaacaaacataccaggaaaacaaaaaaaagctattaaaaTGGTGGCTTCACAGCTTAAAATTCAGCATAAACTACTGAATCCTACATTGGGGACCTCATAGTGTCAATAAAATCAATGCTTAAAATCTTTAAACCACACACACCAATTCAATGACTGTTGAAAGCAATAATCATCAATAGAGAAGACATTGTTTCTGATGAAACCTGCTGCAAAATGATATTGTGTCATCCCGAATCACAGATTTGCTTGTGTGTTCatatatgcacatacacacatatatacaggtTTGTGTGTAGATGTAGGTATgtataacacaaacacatttgttggAAGATGAGATGGCAAGTACAGTATTTGTCATTTTGCCATGTGACACTTCATACAAAcagattattttgaatgtagaAACAGACAAGTCATAGATATTATTGCCAGTTAACTCTAGGTAACGAGGATGAATGGAGTAGGATCATACTGGGTTTCTTTGgtgggaagaaaagaaaagaagaaaacacaagCCCTAGAATAGGCAGACTGTCTTTTTGCCTCCACACTGGACAGGCCCGGGCGAGGGCCGACACAGCGTCGGGGAGAGCAGCGTCTTCCCAACGGACCGTGAAAGATTACTCTCTGCAGAAGGAGCCAAAGACTGTGCTTCAGCCCAAACACCCCCTGCTTGAAAACCCCCCAAAACCACTTGATCTACAACCTGCGGTGCATTACAGCTCTGACTGCAGGAAACCCAGAACGTGTGGCAAAAAATGGCTGAGGATCTAAATTGTACAAAAGTAAGAAAAGCTAGCTACAAACCTGCTCTCATTATATGTTGATATCTCTTTGGGCTGGGGGTTGGCTGGGCTGGAGGAGCTACAAAACTGGGCTCAGTGCTCTCACTTGCTCTAGTCTGTCTACCTATCAGGGCCCCACAGAATTTTTAAAGTTCATTTGTACTGTCTTGTtagtattattcttttttaaatgatgctgGAATATGTGTTCCAGCAGCTATCACCTTACGGATAGATATATCCCTTCTAACAGGGAtaggttttattaaatcaacCCAGTGCTTACAAATTAGAATATAAATGATATTACCAAAAAGAAACCAATCATACTGCTAGTACACCAAAGAGAATTATTGCAACAAGCTCTAAAAATACAACATACTCTACCATAAAACCCTCGGTTATTTAGAATAACACACTTCCAAACCAACTACTATGGTTTAGCCATGATGACATGAGAGAAACTATAAGAATCACACACAGCCCCACACACAAGGCGACATTagagcacacgcacacacctaGACGATCACGTTGTACATGCCTATGTTATCATAACCACTTTgtgcaaacacatttaaagaagagaaacaaaatctatTGGTATCAGATAAGTTCTTCACGAAACAAAAAGGGTGCATACTGCTACATTGTAAAGGGGCCCAGCTAAGATTCCTACCTCGAAGCTACTCAAAATCAGAAGGAAAAGAAAGCTTTtctaaaaggaaaaaggaaaaaaacaacaaaagggaACAAAAGCTATAAATTATCTATAAAGTTTACATCTTTTTCCAGAAGAGCTCATCCAGTCATCTCGCCTGCGTACAATTTGGAAATGGTTTTAAGACAGTTCAAGGCCATCGTATTTCTTTGAAGAGCAGCAGGTATCTTTATTTCACTTCTCCCTTCTCATTGGAGGTCACAAATACAGAACAGGACCTTTTGCTGTAATAgtcattttgaataaaatattaaatttaaaaaaagaacaaaggatagaataaaagggaaacaaatgtttaataataaagaagaaaactTTCCCAAACGCCTGTTGTTGAAGGCCAGGCTGGTCAAAaccaatgaaatgaaaataaaattgcctTCAAGGATtgttaatatttgaaaaaaagaaataaaaataataaaaagcactggcccttttaaaaaatctatttaaaacaaacaaaaaatgcaaaaatccaACCCTCTTTTCTCCCagagagtgttttttttcttctcctccatgTTTTCAAGTTTAACATGTCAGTTTTATCAGTTTGCATgtctcctttcttctttttaaaaattgtcTGTTAAAAGTTCTGTCTAAAGCAGCGTTGGTGTGGCTCcagtgtttttagtttattagtttttgtgtttttttttgtgtttgcttgtttgtctaGAGGTAAGGGTACTGGTTCACCTTGGTGGGACTCAGTGGGTATCCAGTGTAGACTGTGGAAGCCGGCGAGGCGCTGATATAGGTCTGGTGGGCGAACTGGGCCTGGTACTGACTGTGGTGGATGGTGGGCGAAGGGAGGACGCGGTGGCCCATGCTGACGGGGACCTGGTGAACGATGCCCGCTGGGTAGGCTGTGTGCTGGACCGCGTGGCGAGCCGAGCCCTGGGACGCTACCAGGTGGGCCACAGTGCCCGTTGAACCCAGGGCGGTGGGGGTGGTGTAGGTGTAGAGGTGGGGCTGTCCAGGGAGGTGGGCGGCTGCTGCCAGGTGGGGGTGAACGGCAGTGTGCGAGGGGCTGTTGTGGGGGAAGGAGTAAGGTGCCTGTGCGATGGTGGGGGTGATGTAAGCCTGCTGCCTGCGGTGC

Function

symbol description
hipk2 Predicted to enable SMAD binding activity; protein kinase activity; and transcription corepressor activity. Predicted to contribute to transcription coactivator activity. Acts upstream of or within convergent extension and regulation of melanocyte differentiation. Predicted to be active in cytoplasm and nucleus. Predicted to colocalize with PML body. Is expressed in notochord. Orthologous to human HIPK2 (homeodomain interacting protein kinase 2).

NR:

description
PREDICTED: homeodomain-interacting protein kinase 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141619 True 5575 lncRNA 0.38 2 23547797 23554739

Neighbor

gene id symbol gene type direction distance location
AMCG00006864 NA coding downstream 170992 23375367 ~ 23376805 (-)
AMCG00006862 si:ch211-125a15.1,LOC107743608,LOC107726025,LOC107580661,LOC107592225,LOC107658829 coding downstream 245623 23287256 ~ 23302174 (-)
AMCG00006855 NA coding downstream 619392 22881514 ~ 22928405 (-)
AMCG00006847 NA coding downstream 896280 22626401 ~ 22651517 (-)
AMCG00006846 NA coding downstream 940414 22592099 ~ 22607383 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding upstream 76300 23631039 ~ 23752269 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding upstream 294906 23849645 ~ 23868247 (-)
AMCG00006877 NA coding upstream 344420 23899159 ~ 23899569 (-)
AMCG00006875 NA coding upstream 365835 23920574 ~ 23925526 (-)
AMCG00006880 tead4,LOC105029403,LOC107549581,LOC107669037 coding upstream 377661 23932400 ~ 23970204 (-)
G113014 NA non-coding downstream 224646 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 226026 23321077 ~ 23321771 (-)
G112979 NA non-coding downstream 392894 23153868 ~ 23154903 (-)
G112953 NA non-coding downstream 606127 22941459 ~ 22941670 (-)
G112903 NA non-coding downstream 775112 22766273 ~ 22772685 (-)
G113209 NA non-coding upstream 760993 24315732 ~ 24321862 (-)
G113212 NA non-coding upstream 776348 24331087 ~ 24335914 (-)
G113225 NA non-coding upstream 818953 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 1117049 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1837057 25391796 ~ 25392318 (-)
G113050 NA other downstream 140590 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 589491 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 1350133 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 2583235 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 2894138 20647320 ~ 20653659 (-)
AMCG00006866 NA other upstream 13416 23568155 ~ 23571133 (-)
G113530 NA other upstream 2945276 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3847861 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 4712523 28267262 ~ 28292598 (-)
G113833 NA other upstream 5156480 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G96677 hipk2 non-coding NC_047600.1 CM018546.1 9417586 ~ 9503941 (-)