G113212


Basic Information

Item Value
gene id G113212
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24331087 ~ 24335914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141789
TTTCAATCATGGTGAGTTTATTGACCTTACATCATGCCTATATCCTTCACaacacttattaaaaaaaatcttttaaaacagaTCAATAAAGAACTGGTTAATCATATAGAAACTTTGCAATACTGAACACAAACTATCTTTGACATGGACCTATTAACTTTCTACCAGTCCATCTATGACCTTATATTGGGCACATggatttttacactttttgatTCACTGGCCTGAAACAGAGCATATTGGGATACCAGGTAATCCTGCTAGCCACTCCCCCCCTTGATTTCTGGCACTATTTAAACGAAATGTCGACTCTACTGATCTCTATTGCAGTAACATGTAATACACTAAAAAGGATAACATTCCCAGAAAGTAACTGAATGCACGTTAATGCTCTGAAGATTGTGGCAATCAAATGATAcaatacacattcaaataaatgcttAGGTCTTATCTGCCTTACAAAATTGTCTTTTAATTCTCTGCAGCataggattttgttttatgcaatacttttattcttaaaaagaaaaagggtctTCATTATGCACCATGAAAATTACCCAGTATTTGGAGAAATCTCCACACACAATGAAGAATTAGGGGTTGCTCTGTTTCACCTCCACGCCTAATTCTTAAAATAAGTGTACTCTGGAAATGGTAATTCATTCCGCCAGGCTCAAACGGTTACTCAATCACTACTCCCCCTTCCTCTGACATATCCACACTCAATTCATAACTACAGCATCCTTAACTTTCCCCTGACCCTATTTACATCAACAccacttcactttttttttgtcacttaaaaggaggaggaaaaaaaggtaagaataaaattgaattgataTGGCATTACACTCTTTAAAGCAGACGTTTATTGAACAGAGGTTGTGCAACTGACAATGCTTGAGGTACATGGTATGATTATAGtggagggaaaaacaaaactgagcccGATTGTTTTACTGGCAGTTTGAAACATCATGGGATGACAAGGATTTACCAGTGATAACAGCATCATAGATAAAGCAATCAGGGTAGCCTGTTAACTTTGTCCTTTTTTGCCCTATGGAGATTTTCCCCAATTATTTACACAAGCCGAGAGTGAATTGATCCAAAGCCAAATTTCGGCCTTGCATTTCTTTAGCTATCATTTAAATGGATTCTGCAGGGAGTACAATGGCCTGGAACTACAGCTGTTGTTGGGGAATTCAAAGTAGAAATTATCTCTGCACAATTCACAAagctacaagaaaaaaaaaaaaaaaactctgatgGAGATTCACCAAACCAGCACTGTATCAAACCTgcatcaatcaatcttaattgattattattatggctGTAAAAAAGGGctatttatttgatattattatatatttttttatttgtgaatcaAAATTTGCAAGGCTGATGTTTAGCACCGTTAGTATTTATGATATGCATTGAATGGCTAGGTCTCATGTGGAAAGTTTCCATTTTAATGCCCATTCATTGGGGGGATTTGTTTGTTCGTTCTGTTTCCCTTCCTCCACTATATTTGAGTCCAGGTGGGAGCCGTGTACCTTTCTTCATTGGTAAAAAACTTTTTTCGTCTCTGCATCTCatagcaagaaaacaaaccaatgagTCAATCTGTCCTTCTGCTTCACTATTAACGGTAGTACTAGGCTCCCTTAAAACTGCGTAGTTGTGAGGTATTGTGAGAAtgggaactttttttttgtccagtAAACCTGAGGTAAATATATACCGCATTTCCAGAATGtgacaagaaaagaaaggaaaggggaggaaaaaaaacacatcagaaaacaaagacatgCTATTAGAGCAAACTGTACAGAGCATTTCCAGTCAAACACTTGTTTCATGATCTTCTTTCACCATCTACTTcagtattctgtttttttaagcagtaaaataattatataatacaaatgtttataaaatagcAGCACACTCAGTGAAACATCACAGCTAAGTACTGTTAATGTgtataagaattaaaaaatcataGCTTTTTAGCAgcgcaaaaaaaacaaaacaaacaaaaaaaacccaataaaaatacagatactTTAACTTGTTATTACAACCTTGTTTGCACGGTTCACTTTGGAATATCTAATCCCTCAAAAACCCCTCTGTCATCCAAACCCCCAACCccaaatcaaaccaaaataaaaattaaaaaattaaaaactgctcACCCACTTGTTTTCATAGCAACATCCCATACAGAACTAACATATAGGCCCTATGTTTAGCCTATGGTAGAAATGTATGATCCATATACTTTAGTCTGTAAgccatgtatttattgtatgtgttgaaaatatatgttcaGCAGATTCATATctcatatgaaaaatataaggagCATACAGTTCTTCCACATATTAATGTTTCTTCCATACGTGTTAAATGACTTACAGCCACCTAAAAGACAGACATAAAAGCCTTGCATTTTATTGCTGTGCCCACCCCAGATAAGTTGGCAATGTTTTAGTCTTCTCAAACAGCAACTCCATTTAAAaattaactgtttatttataatcacTAGTACTAGTCATCTGGCTGAGAAACACTGTGAATTAAAGATGGATTGGCATATGATGGTGAATGATTGTGTTTTCAGaagcattgaaaaataaatagagattCCCCACAAAAATTGTTTTATCCAGCAAAAGCGTTTTCTATGAGcgcaccccccaccaccccccttACAAAATGGAAcagttaattttctttaaagttGACGCCAACTTATgctggggggtgggagggaaGGAGAATAGTGCCATCTCACTTTCCTCCTATTGTATTGTGCAAATTGAGATGTTCTGGAGCGTAGTTTTTATCAATTTATGAACATAATTGATCCAACACAGTCAATTTCAAGTAGCAAAAGGGTGACAGTTCAGCTCAGCTCTCAGTAGTCATCTATGCCCTGTCCTGATTTTTTAACAGTGAAGTTCCAAGCATAAGTAACATTTTAGAGCTGTCTCGAAGTCACAACTACTCCTCCAGTTGACTTTGGACAGATTCCTTTGCAAAACTCAACTTCAGAACATATGAACTTGCAATAAGAGTAAGAAATACTGCCACGCAACCTTTTAAAGAACAATtttgtgtgaaataataattcagCTGGTATTAGAACATGTGCaaaaaaatcctaacaaaaagttccttttttttctttttcttttttttttttatgtacaccATCCAAGTGACTTAACCATGGAGCAGACAAAAAAATTcaagtaaaattaataaactttattatttgattaaaaaaaaatcccaaaactaaaacaaaaaagaaaagtaaattaaaattgcGAACCTCTTCAgaagctttttatttgtttgcattggCATGTAATAGTTTATCTCTTTAtgatattgtaattattattatttgtttttaaataacatgaaatgtTCAGACTCTTCTCTTTTTTTGGAATGTTTCAGTTGGAATGTCTTCTAGAACAGGTGTTACAAATCACTAAAACACCTCAATCTATCGCCATGGGAACACCTGATGTGGGAAACCAGCcctacaaaactaaaacaaaaaaaaacaaaaaaaaccccaagcaaaacaaataaacaaaaaaaaaagaaagaaaaaactaaaacaaaaaagagaacatCATCATCCCTACATCTCCCTCAGCAGACTTTCAAAAACCATTCCATTCGTCCCTTGGGAGTTTGGTTCAAAGTGCTTTGCTAATGAAATAGTTTACAACAACATGTGGACCAAAGTTGTGGACTTGGCAATAATGAAAAGTGTTCCACGCTTAGAAAATGCAccttttgtgaagaaaaaacaaacaaacaaacaaacataaaaacttgGCAGTGTAAAGTCTGGTTTGATTTCCACTGCCATTCAATTGTGCATGATCGAAAATggtccaaaacaaaaacaaaaacaacaaccttaaaACAATCGAACATAGACACACTCAACACAAACATGTATCAGTTTATTGCAGGGAAAGACCCTGGGACTGTAGCTGTCTTCTGCCTCCATTCCCCACTTCCACCTTCTACCCCAGCCACTGCCTGTCAACATCTTTCCCCTCAATCAGCAGCATGCAGTGACATGAACCGATGTGGGACACTACCACAATTCCACAACTTATCTTAAATAACTATATCCCTCTGTAGCTTTCGCTATTAAGATCTTATTGCTTTGGGCACCGTTGTCCATTTTAAGCCAAGCCCAactgacaacaaaacaaaacagaacaaaataaaacaaaacggTCACCTTGATTGGCGACTTGGCAGTGAAACATATTTTCTCCATTATACAGTACTCCCTTGATAGTACAAGCCACTTGCTCTACCCCTGGCAGTGGCCAGGACGTTAGGACGTTAGGACATTAGGTGCCATTCCTCTTTCTTTGAAGACTGCAGGCACCCCCTTActcttcccctccctctttTATTCAAATAGCAACATTGACATATCTACCTAGCTCACTGTGGAGTGAGTGGGCTCAGCCCCCTCAAAAACTAAGGCACCGCCACGAGTGGCTGCTTAGACATTTTCGAAAGAGAAGTATGTGAGTGGAACACAATAACACAGGTGCCCTAAAAAGCAGGCAGTAGAAGCAACCAACTCTCCGCCAGCCAAGCCCTCCCACCTCCTCTCCTCTGCCTTACCTAACACGCACACGCGCATACATACACTCTGAAGCAGCTATTTCctgacacaaaaaaacagacaaaaaaacaaagcttaTTGGAGTTAAGATTTTTGACGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141789 True 4799 lncRNA 0.37 2 24331087 24335914

Neighbor

gene id symbol gene type direction distance location
AMCG00006883 NA coding downstream 273262 24041077 ~ 24057825 (-)
AMCG00006882 NA coding downstream 299885 24025708 ~ 24031202 (-)
AMCG00006881 NA coding downstream 336733 23972116 ~ 23994354 (-)
AMCG00006880 tead4,LOC105029403,LOC107549581,LOC107669037 coding downstream 360883 23932400 ~ 23970204 (-)
AMCG00006875 NA coding downstream 405561 23920574 ~ 23925526 (-)
AMCG00006887 NA coding upstream 17523 24353437 ~ 24357780 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding upstream 23267 24359181 ~ 24367936 (-)
AMCG00006889 LOC107707394 coding upstream 41885 24377799 ~ 24388627 (-)
AMCG00006891 NA coding upstream 52716 24388630 ~ 24407218 (-)
AMCG00006890 NA coding upstream 85188 24421102 ~ 24439498 (-)
G113209 NA non-coding downstream 9225 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 776348 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 1007936 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 1009316 23321077 ~ 23321771 (-)
G112979 NA non-coding downstream 1176184 23153868 ~ 23154903 (-)
G113225 NA non-coding upstream 37778 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 335874 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1055882 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 1059622 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1380611 25716525 ~ 25716987 (-)
AMCG00006866 NA other downstream 759954 23568155 ~ 23571133 (-)
G113050 NA other downstream 923880 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1372781 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2133423 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3366525 20854057 ~ 20964562 (-)
G113530 NA other upstream 2164101 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3066686 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3931348 28267262 ~ 28292598 (-)
G113833 NA other upstream 4375305 28711219 ~ 28812548 (-)

Expression


Co-expression Network