G113225


Basic Information

Item Value
gene id G113225
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24373692 ~ 24375929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141806
ccccacctcgcaacttacaggatttaaaggatctgctgctaacgtagcacagcacaccttcagaggtctagtggagtccatgcgtcgacgggtcagggctgttttggcagcaaaaggtggacctacacaatattaggcaggtggtcataatgttatggctgattggtttACATTATTCCTGCTGACTATGctgtagctctgctgtttgcactgtggacTTGCTGTATgcggggggaaaaaagcaggtAGCCATTTTTCAGTACATGTATCATCACTTGCATTGTAACAAAAAGTCGAAGCCTTGAGAAAAGTTGATTTAACAGTTGGTAATTCGAGTTTGGAGGGtctttaagaaaaatattattgaaaatgccAACAGTGGGGAAATGTATATActcaacaaatatataaaggCAACATgaaaagtgttggtcccatttTTCCCagaattccattttttttttttttatacgaACAAAAAGCTTATATCTCAAATGTTGTgaacaaatttgtttacatccctgttagtgagcatttctcctttgccaagctAATCCATCCAGCTGACaggtggcatatcaagaagacgattaaacagcatgatcattacacaggtgcaccttgtgctggggacaataaaaggccacttgTGCAGTTCTGTCACACaacacagatgtctcaagttttgagggagcgagTGATTGGTGTGCTGACTGCACAATCGTTTTAGAGAATTTAGCAGTACATCCAAACACCTTCACAACCACAGACCACGTGTACCACTCCAGCCCACGACTCCACATCTGGCTTCTTCACCTGTGGGATCATCTGAGACCAGCTGCCCCAACAAttgatgaaactgtgggtttgcacaacagAAGTATTGCTGCACAAACTCTCAGAAAGCGTCTCAGAGAAGCTCATCTGCGGCTCATCATCCTCACCAGGGTGTTGACATGACTggagctctggtggacattcctgcagtcagatTAGAGtctaattgatttatttaaatggactgatttatttatatgaacggtcaaatctttgaaattgttgcatttatattttgttcagtgtataCATTTCCCCACTGCTGCTATATACAGTGATCATTAGAGAATTCAAACCTATGGTATGATTactgaaaatatgaaatcaacCGGTTAAGTGtgtttacatttcagaattgaaatgtaatctttGCGAAGCACTATCAACacttgtttgtatttgaaatttagcttgtttaataaaagttgtgctACTAATGATAAGgaacattgtattttcaaacttgggagatttaaaaaaactaaaaaacacctCAACATTATTGATAAGCCACTTGGGTATATATGGGTTCGCTTAACTCCACAAACATTTGTTATACAATCAGTGATATTTTCTGACAAATATCTTGTAGCACTGTATATGTTTTCTCTAAAGCCATTTCTGTATACAAGCTGTGTACTAGCCTGAGCTGAAGTTGCCCTATAAGCCTCTTCACAATGGCATGTGAGAGAAAAAAGGTGTAAGAGAAATGATTAGCTCAGGATGTGAAGCAAGATCTCAGGAAAATACAGTGTCatgaaacaacaataaacaaacaaacaaacaaaaaataccatAGTGGATATTTACAGTTAAAGAAacatctgtgtattttaaaagcgTATGCAACAGTAGTATATTTTTCACAGgttaattagttatttaaagGAGTATTTAATTAAGTgagtaattttgtattatttagtgtCATTTTTGTTCCTCATAATAGTTGTACCCTCCCAAGGAAAATTCGTGACCTGTGCAGaataaagtattacatttccttttgagGTTGTTTACCATGTGACCTACAAAATCCTTCCCAGTTAGGAAAGAATTTTGCATGGTTATTACCGTTTTATTTATGAGAATTGGCACTGTTCAAAAGCTGCCCTAAATTAAGTTgcataattgaattaattacttGCTTTGAATTACCAAAGTCCATTGCTAGGAAGGCACAGGATATAATGGAAACTAATGTTTTAGCAAACAGCTGTCAATCGCTTTACATGCGCGATTCATCTTTTCATTAGTTTGACAAACAATCACAGGAAACATACAGCTTCTTGCTAACTAAGAAGATGAGCATGAAATAAGAGAAACTAAGAAAGTGCAGCTCAGACATGACTCCTTAATCCCCTCAAGATAAACCCTACATGTTCATTCATGGAAAATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141806 True 2238 lncRNA 0.37 1 24373692 24375929

Neighbor

gene id symbol gene type direction distance location
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding downstream 5756 24359181 ~ 24367936 (-)
AMCG00006887 NA coding downstream 15912 24353437 ~ 24357780 (-)
AMCG00006883 NA coding downstream 315867 24041077 ~ 24057825 (-)
AMCG00006882 NA coding downstream 342490 24025708 ~ 24031202 (-)
AMCG00006881 NA coding downstream 379338 23972116 ~ 23994354 (-)
AMCG00006889 LOC107707394 coding upstream 1870 24377799 ~ 24388627 (-)
AMCG00006891 NA coding upstream 12701 24388630 ~ 24407218 (-)
AMCG00006890 NA coding upstream 45173 24421102 ~ 24439498 (-)
AMCG00006895 LOC107732972 coding upstream 308079 24684008 ~ 24715289 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding upstream 350563 24726492 ~ 24755821 (-)
G113212 NA non-coding downstream 37778 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 51830 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 818953 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 1050541 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 1051921 23321077 ~ 23321771 (-)
G113301 NA non-coding upstream 295859 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1015867 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 1019607 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1340596 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 1342488 25718417 ~ 25718792 (-)
AMCG00006866 NA other downstream 802559 23568155 ~ 23571133 (-)
G113050 NA other downstream 966485 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1415386 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2176028 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3409130 20854057 ~ 20964562 (-)
G113530 NA other upstream 2124086 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3026671 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3891333 28267262 ~ 28292598 (-)
G113833 NA other upstream 4335290 28711219 ~ 28812548 (-)

Expression


Co-expression Network