G113283


Basic Information

Item Value
gene id G113283
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24673625 ~ 24676576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141872
CCCTTTATCTCGTTTTCTTTAACAGTTGTATTACAATGAGATAATTCTTTGAGTGGTAAGAGATGGAGAATGaaacagcaaaaaaattaaaaataaaactgcagcaaGAACGACAGAAAGGATACAGATATTTGCCTAAGGTAGCACACATTGGCAGTACATAGATTGTTGTAAACATGCAGAAAACATGACGATTGCATTCCAAGAAACCTGGAGTGCTAACAAATTTCTATTTAATATGCTTCATTGTAAGAAATACTGAATGAAACTTCATGACAAAAACCTGCTACCCAAGAGGTTTATCAGTAACTTTTTTTGTAAGAAATAAATTCTTTACAGGGATTTATAAAagatatttgctttttaaaaataccccTCCAGAGACTAATTGAGTTTGGCCTCacaatattgttttgcatttttgaatttattttccgCAAGGGAGTAGGTACAAAGTGATACACTAGCCAGTGTCTGGACtgagaaaaataactaattaatcATTGcaatagtaaaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaaaatatatatacattatgtatgATTTGTACTAAGGACTGAATAATATTTCTATTGTAACTGATATGGTTGGTAGGTGTGGTGTAGTAGGTAACAATGAGCTAAGCAATTATATGCTGTTCTACCTTCAGAACAGGAATTTAACATTTTGGAATAGGACTCAATAAGGCTGTTTTGCTAATTTCTGGCACTTTTACTCCTTTTCCTTTCTAACTGGAAATAAATATGGATACCTGGCATTAATAACATATTATAATGTCAGATGTGTAAATGATGATCCCAAGCTACTTCTAATTATTGCATTCTACTACAGTAATTCTAAATCTGTAACAGTCATATAAGAGAAGGGTTATTGGAATATATTTTCGGTTTATGTTTAAGATACAAAATTATGTTTACCGATTTATTCCACACcagagaatattttttttgacACTGGAATCTGCCAGTGTGGGGTGCCCATATTGCTGCAGTTTTCTATGGATAGGCACTGCTTCAAAGGCGCAGTACTTTGGAAGCGACAGAGCATGCACTCATAACACCAAGTCATGCAGACATTCTTGAACTCCATTCAGCAGGCGCTCCCTGACTAGCGACTAGATGTCTTGAGTGAATACACAATTCAACTGCTAACAAATTTActacaaaaaaaacctgaagcAATTTGTAAAGTCAACCAAATACAATCAAGCTTTATAATGTGGGTTTCATTAGTATAAACATGAGCTAAACTTCACCATGACACAGCTAAAGCCCAAAATGTTCCTTCAGTGTTCTAAAGctattctttttttctctcttccttttccTTATAATGGTACCAGGTTTGCTGTTGATTGGAAAAAATTGTTATACGCCACCCATTCCTGGTTACCTTTGATGTCTGTAAAAGGACACATCCTTAAATGAGGGCAGTTCCCTTCAGACTCCAAAAAAAGACCAAAACTTGCAATCTTTTCCTCTGCTCTCACTTGAAACTTCCTTGGCctgagtttcttttttaaactgtgtttttagaAGCAATGCATGTCTTTTTACTGAGGATTTTGatatttttcacagattttatCAGCATTGCTACAGTTAATTTGCTACAAAGTTAAGCTTTTGGTTGCATATTTTCAATCTCAACAGTGTTTGGGGAAGAAGAGAATACACTTGTTTTActagaaaataaacagataatgaGAACAACAGGAGGCGCAGCCAGCCAAAGAGTAGAACAGAAAGGAATGAAGCCCTGCACCAttctgacaaaaatatattttaaaatacttttgaacTACCTTGCCAAAAACCACAGACAATACATTCATGTAGACTAGAAATTAGTTATATGCCAAATGGAAAATGCTATAGTcccatctttttatttttcttcagtctaCTTTGAGTTTTGAATTCTTTATGTTTTGAGTTCATTtaaatcttaattatttttatatacactaTATGTAGTTAAGTTACATTAGAATGTGATGTTAGCTCTGGCACACAACACGTTATATATCTCATTGTAAAACGCATAAgattccctttctttttttctttctttttcagtgcaGTGGGTTAGCTTCAGAACACAGATgattacttttgattttaatattgtagtgcatcaaatgaaaactttgatgAATCTGTCAATCACGTTCACAATCACTGTCAATTCAATAGCTGTAGTGTTTGTCAGGCAGCACTAATATAAATTCAGAATTATTATTCAGCTAAAGATACATCTCTGAAGTCTGCATAAGCGGAAGGGTAGAATTCAGAGGTATAAAACCATTTCACTTgagtaaaacattatttaatgatGCTTGCACTGGTTAAATGTAAGAATTTGACCATATCAAAAATCATAATCAGCATTTTAAGCTGTGTCCCTTTGTAAATCTCTGTTTGAATCATCACACTATGACAGGCTAACTTTATATTTCCAGACCACATTTGTCCCTCAGAGGAAGAACAAAACCCAAGAAGAGTAACTACagtgtttcattaaaaatagaaaatgtactttacttttttcccctaatGTCTTTAGAAATTCAAGAGGAAGCTGCTAAATTCTCCAAGTAACCAGTGACACATATGGTATTCTGACAggtacaataaatatatatgtatgtcatctgtagaaaaaataaatacaatcaatatcAATCCTTATCTTCTGAAAATGCTTAAAAGTGAAACAATTGCTCCAGTCTGGCTTCCTTCAAAAATAGAACAGGTACATCCTGTACAGAACAATCTTACACAAATCCATACACAcatatagaaatatagaaaGGCATAAATCCATTGAAATTCAAGAATCAAGGTACACAAAATAGTCTATGTTAGATACTTCTATGTATACTAAGAAACTTACAGATAAACCCTTCGCCGATTGTCA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU141872 True 2952 lncRNA 0.33 1 24673625 24676576

Neighbor

gene id symbol gene type direction distance location
AMCG00006894 NA coding upstream 19755 24650660 ~ 24653870 (+)
AMCG00006892 NA coding upstream 171279 24480018 ~ 24502346 (+)
AMCG00006888 NA coding upstream 226062 24440431 ~ 24447563 (+)
AMCG00006885 NA coding upstream 326262 24337908 ~ 24347363 (+)
AMCG00006879 NA coding upstream 650982 24018072 ~ 24022643 (+)
AMCG00006898 NA coding downstream 344554 25021130 ~ 25036473 (+)
AMCG00006899 NA coding downstream 364016 25040592 ~ 25041958 (+)
AMCG00006901 NA coding downstream 401811 25078387 ~ 25114339 (+)
AMCG00006903 NA coding downstream 479510 25156086 ~ 25214360 (+)
AMCG00006905 fbxl14b,LOC106590767,LOC107580311,LOC107656333 coding downstream 659769 25336345 ~ 25340058 (+)
G113233 NA non-coding upstream 263321 24410057 ~ 24410304 (+)
G113224 NA non-coding upstream 300790 24370718 ~ 24372835 (+)
G113159 NA non-coding upstream 384708 24076753 ~ 24288917 (+)
G113090 NA non-coding upstream 951993 23721382 ~ 23721632 (+)
G113075 NA non-coding upstream 1076406 23580515 ~ 23597219 (+)
G113319 NA non-coding downstream 565989 25242565 ~ 25260402 (+)
G113357 NA non-coding downstream 715279 25391855 ~ 25395392 (+)
G113358 NA non-coding downstream 744082 25420658 ~ 25420875 (+)
G113372 NA non-coding downstream 1012159 25688735 ~ 25689111 (+)
G113373 NA non-coding downstream 1020621 25697197 ~ 25697408 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 86506 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 337709 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 637513 24032089 ~ 24036112 (+)
AMCG00006865 hipk2 other upstream 1118884 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 3051117 21617632 ~ 21622508 (+)
G113369 LOC108442871 other downstream 941491 25618067 ~ 25618445 (+)
G113400 NA other downstream 1138479 25815055 ~ 25832942 (+)

Expression


Co-expression Network