G113301


Basic Information

Item Value
gene id G113301
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24671788 ~ 24673498 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141891
atatatcggctATCTGGATTTATTTAAAGTCAGATTTTTCTATTTGagcaaaacacatacacaagaaaaccactgaataaaattgaaaatgttctcatttaaataatacaattctcaTTGAGTTTTAGTGAAAGAAGGCAGGGAAAGTAGGTAAACGTAGGTCTATACATCTGTTTAAAAACCCCAGGCATTTGcaatttactgtacattttaaaattatttggaCTTGTATTAAACACTTATAATAATCCTCACCTTCTTAAAGCATGTACATTGTTTGCATTCTAATCTATCATCCAGCTTTGAACTGtttgggaaaatgaaaaaaaaaatgtcaacagaTACTTTTGTTATTCTTCTTACCGATTCCTCTCAATTACTTTTACGAGGCTATGACCATCAGGACCTGTTAGAAATATATACtgaatcatatattttatttcagtgtgtaTGTAGTTTTGTGCATGTGAAAGGATAGGTCCCTATGATCACTAAGAATAAAGCTGTctaatatggcaagccaaattattttttagagatatctttaatttaaagatattcaaatatttcaagatatttctaaatcatgtaaagatatctgcaaatcaattagagatatatCTCTAGATATATctctgcaaatcaattaaatatatctaatttaaaaggaTATTTGGCGATATCTCGaagtatttgaagatatcttgaaatgatcaTTTGGTTTACCATAGTCTTACCAATTGAAAACATACTAGTGATCAAAGTCCAGTATTGCTAGAATTGCAAATATATGCTGTTTTATTGGTTAAAGATGGAGATTGCACTTTGTGTGTGCAATCTAGATTTCtaatcagtttttttaattccaggcaTTTTCAGAAGTCCAGGTTTAGTATTTTGGACAACAATGACATATGAATTTTTTAGAGAGAGGCTAAGGAGaaagtttgaatgtttttatggGAACTACACTGCAACTATagacatgtttttctgtttttcagataGTGATGTGACTGACAACacctttaaaattgtaatatatatatttttgtttctagaTTACAACATTGAAAAggaggaacatttaaaaatagactggataggatccttggattacttaatggacaccaaacgagcacgatgggtcgaatggcctcctctcgtttgtaaactttcttatgttcttatgttcttaatatttgtggagaaattaaatgtgttcaaaaataaataatgcataattgaCTGATCTGAACAACAGCAGATTTAAACTCCTTACCCTAACTATCTAATCCATGTATATCAGCTAAATTAGCCACCAACCCCGCCACCTCTTTCTACCCAAAGAGAAGGTGCTGATCCAGTTTAATGccatttcatttccttttcttttgctttttcattctttcattgaAATTTAAAGAGAATCAATTCAAGCACTTTTTCTACTCTTGTtttcaaaaaacagaaaaaaaaaaaaaaaaaactattgatttGTAAATAAGCGATGTACAGTTTGTATCCGTAACTGTCAGTCTGTCTTTGGTGACAGAGTCTGTCTTGCTTATAACGCACGCTACCagtaaataaagattaaaaataaaaaaaggaaaaatatatttagactgTATGGTGTAACATTGCATTTTTATCTAAGGAatgatgttattaaaaaaaatattgaaaataaattgaatttccTAATGTT

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141891 True 1711 lncRNA 0.30 1 24671788 24673498

Neighbor

gene id symbol gene type direction distance location
AMCG00006890 NA coding downstream 232290 24421102 ~ 24439498 (-)
AMCG00006891 NA coding downstream 264570 24388630 ~ 24407218 (-)
AMCG00006889 LOC107707394 coding downstream 283161 24377799 ~ 24388627 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding downstream 303852 24359181 ~ 24367936 (-)
AMCG00006887 NA coding downstream 314008 24353437 ~ 24357780 (-)
AMCG00006895 LOC107732972 coding upstream 10510 24684008 ~ 24715289 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding upstream 52994 24726492 ~ 24755821 (-)
AMCG00006897 LOC107590584,LOC107732972 coding upstream 111100 24784598 ~ 24805892 (-)
AMCG00006900 LOC106609805 coding upstream 288676 24962174 ~ 24969473 (-)
AMCG00006902 NA coding upstream 458314 25131812 ~ 25145341 (-)
G113225 NA non-coding downstream 295859 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 335874 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 349926 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 1117049 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 1348637 23322933 ~ 23323151 (-)
G113374 NA non-coding upstream 718298 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 722038 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1043027 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 1044919 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 1045864 25719362 ~ 25719575 (-)
AMCG00006866 NA other downstream 1100655 23568155 ~ 23571133 (-)
G113050 NA other downstream 1264581 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1713482 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2474124 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3707226 20854057 ~ 20964562 (-)
G113530 NA other upstream 1826517 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2729102 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3593764 28267262 ~ 28292598 (-)
G113833 NA other upstream 4037721 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location