G113357


Basic Information

Item Value
gene id G113357
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25391855 ~ 25395392 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141961
cagatgGATAAAAGGCAGTACATTTGTTAAACTTGtaaataacaaagacaaaaaaaattataatttgtaaattcTCTATGAAATATGGGAGAACCCAAACCGTGACTGTGTTCCtgaatgcaatataaaaaagtatattcCTATAAAGTATGGACCCGTAAAATTGAGAAGGCAGGATTGCTGGCAAAGATCATCACATAGTTTGAAGGCAAGGAAGAGTAATAAAAAGGTGAAGTGCCTGGGGACCATCAGTCTAAACTCCTAGTCATAACCCGGCTGACTACAAGTCATAAGGACCTTTTAAAAAAGAACTTAGTCTCAAAGGGTTAACATCTCACATacataacagaaaatgcataataacaggtgtgtgtgtgtgtaatacataACTGATCTTTATCTGAGATTACTGTTCAGCTATGGTTTAGACTGGCCACATCCTTTTTTGCCTCTGCTGgtaaatactttatatatactgtTGATCATGTGGGGACACCTCAAGATGATGGGCTAAAATTGAAATCCAAGTTTTGGTCTCTGCAAGAACTTCCAAACCATCAAACGGAATTTGGAAACCCAATTGAAAAGGTAATGTCCTTTGACAGTCAAGTTCTCCCGTGTGTGTCCTTTTGACCATCCTTCCCCTCTTAGCCTTGCCTGTCATACAGCACTGGTACTTGTGGACTGGCTTGTGGACTTGATGGTACCCAGTCTGTCCAGTAAGCCTTCTGACAGTGTTTTAGAAAAACTGAAGACACTAACTCTGGCACATTTTAGCACAGATTCAGATTCCTTGGCACTGAAGGACTGGTGACTAAAGCAACATCTAGAGTCAGTAAAACAACTTTCATCAGCAGATTAACAGTGACCTAACAAGGAGgctaattaattatttaccttttattaataattattctgGTACGTTTTGCTAGTAGCAACACATCCGTCAAACTAAGTATTGCAGGTCAGTACTTTGTTTCTAGCAGGGACTGTGAGATTTTCAACAGAGAAAGTACAATTGCACATTTTACTATCAACTGTTTTAAAAGAGCCACTGACGGACCACAGTCTATGCTAGCTactaaaatgtaacttttcaatggttgtttccatttttttcctttgtcctAACATTCTAGCACTCTGGTGAAGAAGTGACATGTTAATGTGATGTGAGACAGCAATGTTAGGGATATATCTGGACCTGAAGATGGACTGCATATGCAAAGGAAACACTGATGCATGAAAACAGTCATTGAAAGCCACAATTCACAATAATATAGATTGTTTTATCTTTATAGCCCATTGTTCCTTTATTACTCTAAATGTAACTACATGATATACAACATGGACATGAAGAATGTACTGCGGATAAACAATTTTGTGGATAACATAACTAtgaatacttgtttttttatacatgGTGAAAATTATACTTAATATGtgaagattaaaacaaaatagaaaaagcaaacaaaaagcttaaattaatacacaaattGTATGTCTTTGCAATTGACATGGGAAAACGTTTGCAATGCATTAGAATCATTCAttctctcatttttttttaccagcaaTCCAAACAGCATGGTATCACAGTCTGTAAGAAAAAGGTCTTGGTGTTTAAACCTAGAAGAACCTAGTCTAGGTTGGAGCTCTCCCCTCAGATAACAGacacaaatgttattttcagatAGGCTGATATAAAACACGTTGTAGTTTCAATATCGCAGTCTCAGACTCACACAGACATTATCAACAggctgcaaaagaaaaatatatatattcgaagaaataaaaaatatcgaGATACCAAGTACGGAATTACAGTACTTTTCAAACACGtggtatattttcaaaatctttgCGTTTACACCTTATTTtgacacaccaaaaaaaaacaaaaaaaaaaaacacatttattgttttatggttttaaaaagaCTCAGGGGTAGCCATTTTGTtcagaaggatttttttttttgtccttcccCATTGACATTCTGTGCAAAACGTTATATTTAActatatctatgtatttatatataaatatgtatatgtgtatatatttattaaaacacccCTGTCTGGTAGTACTTGCAGTGCTGCAGATCTCATTTGTTGCCTTCATCCTGAATTTTGtgacaaacaagcaaaacaactgaatgaaaataaaccagGAATCAGCACATGCACAACCAGAGAGGTCAGATGTATGTCCATCAAAACACATGTCCGTCTTACACATTTACAACATCATGGAGTCATTCACGCATTTGCTTTTCCTCACATTCTTGCAGTTTGAAGACACCTTGAAGCTGTACAGATAATGAACGCAAGTCAATCCTATTTGCAGAGTTTAAGTTTACTTTTTTAGTTTCCCCACCCccgaataaaattaaaaacaaaacacaaaaatcatctTCATGCTTCGGGATGGAGGCAGTGGCAGTGTATACCGTATCCAACgtgacattttgattttgaatagcACCAGAGAGCAGCATTTAAACCTTAATCCTTAAAGTTACTTAACCTGTTTGAAATAGTTAGGATGCTAAAAGAAACCTCTTAACGGATCGTATACCCTATTTGTTTCCCACTCGAAGAAAACACTGAGTcaatgaaatatacagttaatacaacaCTGTCTTCCCTTACACTGCACCAAGAGCAGTCATGTAAGAAACTGCAGGACGTGTGAAACATCTCCATGTTCAACGTTGAAacattagtttttgttttgtaacaaagcattacaatttcaaactcaacttatttaatttgagtCAGTGTATAGTCTATAGCCTAAATGTATATCACAACCTTTCTTAAACTAGTTTTAACTCATTTGCATACAACAAGATCTTTCCTCATCTCACCACAATACCaaatagcatttattttgtcaggCACACTATCTTTCACACATCAGCTTCAGCAGTGCTAACAGGCTATTATTCTGACATTTACAAGACATACAGTAGAAGTTTGATCAGTCcctcactgcacacacagtaTGACCCAATTTCGTTTTATCCAGAAATACAAACTCGCTCAAGGCATGGAAATTTCtagtattttttcaaaattaagaaTCACACAGAAGCTCACACTTACTGGTTGTTCAGTTGTACTTCTGCTTAAAGTCACCATTATATTCCATATTTTAGTTTGCCTGTGAAACCTCCAGAAATAAATTGCTGAGCCACTTCTGCCAGTTTGGCTCCAGATTGGGACATACTGTGGCCCTTCCATCCCAAATGGACAGTTCTCTCCACAATAAAGCCAAGcattgtgttttctcttcaaTGTAAATGCTCACAAAATTGAATgtgacaaagaaaaaatgtcagttttactTGCTAATATTAGCTTTAATATTTCACTAAAATAGGTTTTCTTTAGTACCAATTTACTGTGaaacaaaaagtacattatGCTTCCAGCTCCTAACAAATGCACAACTTTGAAGCACTTGCCTGGGGAATTCCACATCAGGACAACAGGAATTTGCACTGTGGTGGACACCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141961 True 3538 lncRNA 0.36 1 25391855 25395392

Neighbor

gene id symbol gene type direction distance location
AMCG00006905 fbxl14b,LOC106590767,LOC107580311,LOC107656333 coding upstream 51797 25336345 ~ 25340058 (+)
AMCG00006903 NA coding upstream 177495 25156086 ~ 25214360 (+)
AMCG00006901 NA coding upstream 277516 25078387 ~ 25114339 (+)
AMCG00006899 NA coding upstream 349897 25040592 ~ 25041958 (+)
AMCG00006898 NA coding upstream 355382 25021130 ~ 25036473 (+)
AMCG00006910 NA coding downstream 320435 25715827 ~ 25721613 (+)
AMCG00006916 NA coding downstream 415171 25810563 ~ 25822470 (+)
AMCG00006912 NA coding downstream 434082 25829474 ~ 25836610 (+)
AMCG00006911 NA coding downstream 456013 25851405 ~ 25861865 (+)
AMCG00006917 LOC107596953 coding downstream 516963 25912355 ~ 25937570 (+)
G113319 NA non-coding upstream 131453 25242565 ~ 25260402 (+)
G113283 NA non-coding upstream 715279 24673625 ~ 24676576 (+)
G113233 NA non-coding upstream 981551 24410057 ~ 24410304 (+)
G113224 NA non-coding upstream 1019020 24370718 ~ 24372835 (+)
G113159 NA non-coding upstream 1102938 24076753 ~ 24288917 (+)
G113358 NA non-coding downstream 25266 25420658 ~ 25420875 (+)
G113372 NA non-coding downstream 293343 25688735 ~ 25689111 (+)
G113373 NA non-coding downstream 301805 25697197 ~ 25697408 (+)
G113383 NA non-coding downstream 327489 25722881 ~ 25724671 (+)
G113394 NA non-coding downstream 345591 25740983 ~ 25745859 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 804736 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 1055939 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 1355743 24032089 ~ 24036112 (+)
AMCG00006865 hipk2 other upstream 1837114 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 3769347 21617632 ~ 21622508 (+)
G113369 LOC108442871 other downstream 222675 25618067 ~ 25618445 (+)
G113400 NA other downstream 419663 25815055 ~ 25832942 (+)

Expression


Co-expression Network