G113369 (LOC108442871)


Basic Information

Item Value
gene id G113369
gene name LOC108442871
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25618067 ~ 25618445 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141973
CCCGCAAGGCCGCAGTCTCCTTATCCTTCTGGTCTAGCAGGCTCTCCAGGTGGTGGACATGCATCTCAGCCTCGGCCAGGCGGCGGGTGCGCTCGTGGTCTTCCTCACTGGCCTTGGCCGACAGCCCCTTGCTCTGCAGCATCTCCAGCAGCTTCTTGATGGACTCGTCACGGGCGCTCAGAGTCTGCTTCTGGGTGTCGATGCGCAGCTCCATCTCCTCCAGTGTCTTGCGCAGCAGGAAGAGCTCCTTGGCCTGGCGCTCGTGCTCGCTATGCAGCCGTTGGAAGTTCTCCTCCGTCAGCTCGGAGGCCAGGGGCTCACTGGGCCGGCTGCTGCTGTCCTGCTGGAAGAGCTGGTTGAGGTCGCGCTGTATGCGCAG

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141973 True 379 TUCP 0.64 1 25618067 25618445

Neighbor

gene id symbol gene type direction distance location
AMCG00006905 fbxl14b,LOC106590767,LOC107580311,LOC107656333 coding upstream 278009 25336345 ~ 25340058 (+)
AMCG00006903 NA coding upstream 403707 25156086 ~ 25214360 (+)
AMCG00006901 NA coding upstream 503728 25078387 ~ 25114339 (+)
AMCG00006899 NA coding upstream 576109 25040592 ~ 25041958 (+)
AMCG00006898 NA coding upstream 581594 25021130 ~ 25036473 (+)
AMCG00006910 NA coding downstream 97382 25715827 ~ 25721613 (+)
AMCG00006916 NA coding downstream 192118 25810563 ~ 25822470 (+)
AMCG00006912 NA coding downstream 211029 25829474 ~ 25836610 (+)
AMCG00006911 NA coding downstream 232960 25851405 ~ 25861865 (+)
AMCG00006917 LOC107596953 coding downstream 293910 25912355 ~ 25937570 (+)
G113358 NA non-coding upstream 197192 25420658 ~ 25420875 (+)
G113357 NA non-coding upstream 222675 25391855 ~ 25395392 (+)
G113319 NA non-coding upstream 357665 25242565 ~ 25260402 (+)
G113283 NA non-coding upstream 941491 24673625 ~ 24676576 (+)
G113233 NA non-coding upstream 1207763 24410057 ~ 24410304 (+)
G113372 NA non-coding downstream 70290 25688735 ~ 25689111 (+)
G113373 NA non-coding downstream 78752 25697197 ~ 25697408 (+)
G113383 NA non-coding downstream 104436 25722881 ~ 25724671 (+)
G113394 NA non-coding downstream 122538 25740983 ~ 25745859 (+)
G113409 NA non-coding downstream 274212 25892657 ~ 25894634 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 1030948 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 1282151 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 1581955 24032089 ~ 24036112 (+)
AMCG00006865 hipk2 other upstream 2063326 23509149 ~ 23554741 (+)
AMCG00006829 NA other upstream 3995559 21617632 ~ 21622508 (+)
G113400 NA other downstream 196610 25815055 ~ 25832942 (+)

Expression


Co-expression Network