G113375


Basic Information

Item Value
gene id G113375
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25395536 ~ 25398698 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU141979
TGAAAACAGGTAAATGGCAGAATAGTTTTCTGAATATGACCACAAGTCATCTTTTAAGCAGTTTAGGTATCTTGAGTAATATACTTTTGGGTTGAGGGAGAAAATCCTGGTTGTGGATATAATCTAATACTCACAATGAAGCTCATAGTCCTAATGGAACAGATTAGGCTCAGATTAGTCACTTTACATATCTGTAAAAGGACACTGTTCATGATGTAGTATCCATGACCAAGAGTTTTTTAATGATGTGGAAATGCCCAGATGGGCGATGCTCCTGGAATTGTGCATGATTCTAAAGGTGATATCCTGAAGTAGCAGGCATAAACTGATGAGTACCATGCATTGCTGGAAACCTTTGTAACTGAAATCGTATAAAAGTCATACCAGCACACTGATGTCACTGCAAGTCAGCGTGAGCTCTGATAGTTAAAGCACAGCCACACCTTGCTTTCTCTTACTGTAATCATTTTTATCAGCACTTTCAACCTGTACAATCCTGCATACTCACAAAGTCGATGATAAAGTTATAAAGTTGGATCGTTGGCATTGGCATTGGTACTTCTGCCCCATCTCCAGTTCTAGTCCTGGCAGTATTTTCATCTGTGAAAACTGCAGACTGATGTCCTTCATTTCAGTTCCTTCTGTCCCACATGGGACAATGCCATAGCACTGAGCTGACCTGACTAAGGCATCTGAACCTTCCTCATATCCCTATTTAACAGACCTTCTATTGACATGTAGGGCCTATTGCTTCATTTAGTTTTGAATGGCCAGAGATGTGCCACAGGAAGAGATAGTGACGTCTCAGCTGTAGCCGTTTAGAAAAGTAGGGTCAAGCAACGGGTGAGACATGCACAGAGCTGATGGTCTGAGTTAGTCTTTTTCAGAAGAACGATGTGGAGATAAGAAGTCACCCGCACAAGAAAGCCAGGGGGAGATAAACAATTTAAAGAACACCCAGATGTTGTCTCAGTTGTGTTTATTAAAGGGAAAGGGGATCGCAGTTAAACTGTACTGAGGTAATGGGGGAACGGCTGTTGAGCGTTGCTGCTGTTTATAGTCCAGTTGGTTGCGGTGGGGAGTTTGCTGCTCTCAGAATTCAACGTCCCACCCGGCTCTCCATCCATCTCTCACAAATTCAAGTTGATTACACTAAGCCCTTTTAAGTGAAGAGCATCGCATGCTAAACAGACTGGCTTTCCTATTGACAGCTGTGTCACTGAAACCCATCTTCCCCGAACTTCATCCACCGGACAGCGCAGATTTCCAGAAACGCGGTTGAGGGGAGTCAACATCCTGTGTTACAGATGCCAAAGTCATGCTTGTTGCTCACACACCTTGAGCAAAGCGGTGGCCTGAGAGCAGAGCGCATTTTTCACAGATCGCATCATCGCGTTTCATAAACAAGCCTCTTCAatcagtaattaaaatgtacaagcCTCTAGATCAACAGCAGAGAGGATGAAAGCTTTTACTACGTCAAACCCAGCTGTGGAGGCATTGTGACACGACTTAATACATGGGAATTTCTTGTTATCTGTGGGGTGAATTAGTTCATGTGCTATCAAAGTGAATGGcctcatctgtctgtctgcactgtGGTGAGGTTTTGTGGTGGGCAGTGCAAGGTTCATCTGAGGTCAACCTTCGCATAAACACCAGTGAGTACGTAGGAACATTACCCGCTGGTGAACTCACAAGGAAACCTGGGATTTGGTTGTGTGAAGGCAGGGCCGGGACCAGAGACAGGGAAGAGCTCAGTCTTACAATAGCTAGTATAAATTGTGGAAATTGTGTCCAGTTGAAGGAGTGAAGTTCACACATGTTGCCGGGTCTGTACACTTTGCTGTGTCACAGTAACAGGCCTTTAAGGCGGTTCCCATATGAACTTTGCTATAAGTGCATAGTTTTATACCCCGTCATGAAGTTGTTTAAATCAGTGGAGGTGGATCACAGGGACCTTATTTGCCTATCAGAGTTTATCAGGTCATGATGTCATTATCAGTAAGCTGCTGTTAGTCTGGTCTAGATAGGTGAAGTTAAGTAGTGGCAGAACTGATTGTTTTTAAACCCTGCTTTGAAATACAGCTTCCCTTTTTGATTTCTCTGACGGTACATATACAAGGAAATTCCATGCTGACCATGTCATTAAACTagtaaataaagttaaaaaaaaaaatccatgtcCAATTCAAGAGAACATATGATTTctatgttttggttttaaattctttgcattgcatttatgTCATAGCATACCTTAATGCTTTCTCAATTTTGCTTTTGCCTTGAGCTCCAAAATCTAAAACCACAAGCCAAAGCGTCAACCACAAAGTAACACCTGTGGCAAAATGACCTGAGAATTTGTAGTCCAATCCATAACACTATAATAACACTATTCATATATAGATTAACCTTCACTCTATGGCTGAAAATGTTTGACTGTTAAATAGGCTGTTTACACAAGCCTGAAACCTTTACTGTTATCTCTCCTCCCCCACCATGCTTCCTCAGAGGAAGATTTAAGAATTTAAATAGCAAATTAAAGAAATCGCGTAACAATACTGGTCTAATTTCTGCTGGTGGGCCGTGTATAGTTTGTTCTGTGGCCGTTGTTTTGTAAGTTATCAAgcttgggaaaaacaaaactgcaacaacaacgaaaaaaacatgaagtgttttaaattgtagttaACATCTAAGTTCTCCTGGCTGGTTTTGTCTGGAGTTGAAATGCAGCTTTGCTAATACAGTAATGACTCCTGTGCCGCAAGGAAGTACATAATTGAGGAGCCCAACTGTGCTGTAACACAACGCCTTTGATTGTTTCCAGGGTCTGTAGCAGATCTCTGTTGCACTGAGGTTTGTGTCCATATAAAGCTGTGTTTCCTTGCCATCAGAAAAATGCTGAACTGAAGTGTTGGCTTCTTCGCTTTCTACAGCTGCGGACCGGAGATAGAGACGTACCTCACTGTTATGTGGATTGCTGTGGCTGCTGTTCAGATGTGAATGGACAGTCTTAGTGGCCAGTTTGTCACCCACTGCCGCCTAAACGGCAGATGCTTACATAATAAAGAGAACCTATAGTCTTTGGTGTGGGAAATCCATACACTTTAATTACCCAGATATTGTTTGAATTCCTTCAGACACTCAGTAAGCGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141979 True 3163 lncRNA 0.42 1 25395536 25398698

Neighbor

gene id symbol gene type direction distance location
AMCG00006906 LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030 coding downstream 82095 25309625 ~ 25313441 (-)
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding downstream 136969 25242554 ~ 25258567 (-)
AMCG00006902 NA coding downstream 250195 25131812 ~ 25145341 (-)
AMCG00006900 LOC106609805 coding downstream 426063 24962174 ~ 24969473 (-)
AMCG00006897 LOC107590584,LOC107732972 coding downstream 589644 24784598 ~ 24805892 (-)
AMCG00006907 LOC108442871 coding upstream 2012 25400710 ~ 25448412 (-)
AMCG00006908 NA coding upstream 117877 25516575 ~ 25518323 (-)
AMCG00006909 LOC108442871 coding upstream 146615 25545313 ~ 25671743 (-)
AMCG00006913 NA coding upstream 326541 25725239 ~ 25735881 (-)
AMCG00006914 NA coding upstream 348438 25747136 ~ 25778618 (-)
G113374 NA non-coding downstream 3218 25391796 ~ 25392318 (-)
G113301 NA non-coding downstream 722038 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 1019607 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 1059622 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 1073674 24315732 ~ 24321862 (-)
G113389 NA non-coding upstream 317827 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 319719 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 320664 25719362 ~ 25719575 (-)
G113393 NA non-coding upstream 339856 25738554 ~ 25738867 (-)
G113395 NA non-coding upstream 342370 25741068 ~ 25745985 (-)
AMCG00006866 NA other downstream 1824403 23568155 ~ 23571133 (-)
G113050 NA other downstream 1988329 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 2437230 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3197872 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 4430974 20854057 ~ 20964562 (-)
G113530 NA other upstream 1101317 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2003902 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2868564 28267262 ~ 28292598 (-)
G113833 NA other upstream 3312521 28711219 ~ 28812548 (-)

Expression


Co-expression Network