G113556


Basic Information

Item Value
gene id G113556
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 26964348 ~ 26965795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142216
tgtgtataaaactgTATGCTCCCTGAACTCTTTAAGGAAGTTGAGACAAAGACCTGCGTGTCACCAGTCGATCTTGCTTCCGAGCGCTCGttaataaagactctgtttaaTTCAATCATCTTGACGGTCtaatttctaaaaataacttAGGGGATTCTTCAGTATGGTTCCTCCGGAATAAAGTGGACATACTTCATGCCAAATGCCTAGTGGAAAGGGCCTTCATGGAGGCCTGCATCATCGCCTTGACTGAAACCTGACTCGATGAGGCTGTATCAGATGCCCAGttaccagaattcctgagctcatcggcccatgaatTGTTCTACATCAAAGTGAAAGTCTTGGGAGTAtggctcacctagaatgggccaaaggcttggaatccctgctgtgaaaatgtctgtggaatagggcctggaggtagtaaaactctttgaagcaggtgagagccgaaatcctgaaacagagctacgaacccaggccaaccggcatttccaaaagatggcatggattgacatcaggcatgaatcgagcctcctccaataggagactgggtGGGCTGGCACAAATCCAACCTCACAAACTCAAGCACCAATTGCCTATGATCTGAAGGCATAAAAAGTAGCGAACAGCactttctcgctctctctcatcTGAACCGGTAACTCGCTGCCTCAACTCAActtagctctgttgccagaaccagaaccggaaaccaaccaagtctttgctggcaacagaagagtttaactgggagaaggagattgagccataAGAAGAATTCATTAAAGAACTTTACTAAGTAAAGAAATTTAGAACCTGTGCCTGCCCGCCTGTATCCACCTGATCAATGGAGTGTatgcagctggacaattgacaaTTGACaagtcgactgtaatacagaagtgttcagtcatttaaatagctattgagtcttggaaactaacagggccctgctttcctcaaagactttgtcttcaagtaattACAGTGGAAAACTCTGCTTGCcaagaagacatcctgtgcacacccttggagatcttcaaaccagtggaaaatctgtttggaaaagactctactttcgtgAAACCCCANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142216 True 1100 lncRNA 0.45 2 26964348 26965795

Neighbor

gene id symbol gene type direction distance location
AMCG00006931 NA coding upstream 193496 26770526 ~ 26770852 (+)
AMCG00006930 NA coding upstream 258184 26704780 ~ 26706164 (+)
AMCG00006928 NA coding upstream 704096 26234852 ~ 26260252 (+)
AMCG00006927 NA coding upstream 760607 26196317 ~ 26203741 (+)
AMCG00006921 nup205 coding upstream 992236 25949686 ~ 25972112 (+)
AMCG00006933 NA coding downstream 358438 27324233 ~ 27325720 (+)
AMCG00006936 NA coding downstream 650340 27616135 ~ 27627333 (+)
AMCG00006937 NA coding downstream 845390 27811185 ~ 27831056 (+)
AMCG00006950 NA coding downstream 943411 27909206 ~ 27910398 (+)
AMCG00006942 NA coding downstream 948505 27914300 ~ 27935789 (+)
G113551 NA non-coding upstream 151127 26812733 ~ 26813221 (+)
G113546 NA non-coding upstream 258880 26705236 ~ 26705468 (+)
G113543 NA non-coding upstream 313320 26650751 ~ 26651028 (+)
G113541 NA non-coding upstream 319337 26644756 ~ 26645011 (+)
G113537 mtpn,LOC106576424 non-coding upstream 324169 26607659 ~ 26640179 (+)
G113557 NA non-coding downstream 998 26966793 ~ 26967236 (+)
G113564 NA non-coding downstream 12114 26977909 ~ 26978110 (+)
G113572 NA non-coding downstream 93575 27059370 ~ 27059594 (+)
G113574 NA non-coding downstream 96717 27062512 ~ 27062845 (+)
G113585 NA non-coding downstream 189740 27155535 ~ 27155862 (+)
G113400 NA other upstream 1131406 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 1345903 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 2377229 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 2628432 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 2928236 24032089 ~ 24036112 (+)

Expression


Co-expression Network