G113645 (ptn,LOC106609498)


Basic Information

Item Value
gene id G113645
gene name ptn,LOC106609498
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27402600 ~ 27527348 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142323
cctccctctttctttctctaggTCTCCCCTGCTGTGAAGTCTGTCCCTGGAGTGACCTTGCCTTAATGAGCTCCTGATCACGAGTTAGGAATAGAGCTTTTAGTTGGGTGTCTTCACAACAAAATAGGCAATACATTCTAAGTCTTATTGAAGGCAAGAGAGAAACAGGGACAGAGAAGGAAACCCACAGCAAATCACAGCCACATCCAAGCCTTCCAACTCAAAGATGCAGAAACAGAAGCAGTGGGTGATGGGAGCTATCATCATGTCCCTCTTGGCTCTGTCTGCAATGGCAGCGGAAGCTGGCAAAGCGGACAAACAAGGAAAGAAGGAGCGGAAGTCAGACTGTGGAGATTGGCAGTGGAGTGTCTGCGTGGCCAATGTTGGTGACTGTGGCCTAGGAACAAGAGAAGGAACCCGGACAGGAAATGACTGCAAGCAAACAATTAAAACCCAGAGATGCAAGATACCCTGTAATTGGAAAAAACAGTTTGGAGGTGAGTGCAAGTATGACTTCCAGGCATGGGGAGACTGTGACATGTCTACTGGCAGGAAGAACCGTACTGGCATACTGAAGAGAGCCCTCCTGGATGCTACTTGTCCCGACACTGTCAGTGCTACAAAGCCCTGTGGAAAAATTCCCAAGATAAAATTACAAGACTCCAAGAAGCCAAAGCGAGAGGGAAAGAAGAAGGAACGCACCCCACTGGACTAGCGATGCTGCTGTTTAATAGGGAAGGTGCTTTATCAATATGGGTTGTAGAATTTCTCTTAGTAGTCTCCAGCCTGTAACTTTTTATTCCCACGTATAATAGATCATCTGttcagatgaaaaataatttgtagcagatataatacaaaacaaataaaacatcaacaaaaaataaaatattatgtttccttttaaaccatagaaatgtaactgtaattgTAACTCTTAGGGATTTTAATATCCAATAATATAAACAACGCAAAGTGATTAATACTAGATTTTATGGAACTTCCTGAATAATTCTTCCTTTTTAAGTAACATATTTGAATGTAATActtgaaaaaacataattcagaCATAACCTTACAcatgataatagtaataataatcataataattatgattattattatatattgtcaGGTTTCAATCGGGACAGTGTATTGCATAGTTAGtaggaaatattttaataattttttacttcattgttttttatttgtgattggTTCTGTAGATTTATTCCCAGCTGTGCTATATGTTTTCTCTGCTATATGCTGtgctaaatcaaaacttcaacccaCTTCAGAATCACAAATCCTATAAGCAATGTTTGATGGTGAAATATATGCAGTTGTCAAATCTTATCCTATAGTGAGTCTCAAATAGCTAAAATTGGGTATACAAGTTTATTCTAACAAAATCTGAATTTCCAATCCAAGAGTACacttaatgtattaatttaatgtattctgaattattgttttatcaCATATAGGAAGAGATATCAATCACctgtgaaaatgcattataaacagCATACacactatttaaattaatattagtGAGATTCTAATGCTTTTTAGCAAACTGAAGTTAAACTTGAACACCATCTTGAGAACTGGTGTAGCAGATTTCATTGGAATCCCACAATCTAATGCAGAATCAGTTCTtctgaaaatgtgaatgtttgaAAAGAGCACTTCAAAGTGATGTGTTTGGAATTTGCTGATAGCAGCTTGGttgaagttttcatttaatccagAGCTCGGttaagattaaattaatctttctcAATCAGCTGTGAATTGCTCTTGTACCAATAAAGGAGAACCTACTAtgtaacaaataaacacaaccaaattcaatgtaaaaacacaaaaccttcAGAATGAATACTACATATTAAAACTAAGGCctggaacaaattaaaacttGACATACCCACCAattacatattacaatttcaatgctggatagtggttttattttattttatttattttattttttattttttttgggagggggggttgtATGTTGTATGACTTCTCCTTCTACCGATTGCAAAACTGCCATCAAGTACtgagtttttaatttatgataGGTGGGTGGTCAAAGCTACCAGACAGTCAATGACATTAAATAATTTTTCAGAACTATGgtgtcttttaaatgtgtttgcaaTGCAGTGTCTCATTTTATGTGGAACATCTAATTTACTCTGAATAATATTTgcccatttttgttttcaagcaGTTTGGAATCAAAGTATGTTAAAGATTCAGATCATTGAGCTTAATTCCAATTTGTCTCTTAGCAAATACAGTAAATCCAAGGAGACTCAAGCAAAACcctaatgtttaaattgtactATTCCTACTACTAACTATGGAAGAAGTTtggctgtgttttctttttcttttcatgtgaCTCAGAGGAaatttaagtgtatttttaatgccaCTGTATCAAATCCAGTgcactttattttccttttttattagtggaaaaataataaaacaacatttaataatCTTTGAGGACAAAACTACATTGATTAAAcattgattaaatgtaaaaaaactgattaaaattttgaaaaataagatcTATAAATTGTGTTTGATTCAGTGTTCTGTTAACTAATGTGCCTCAAAACTCAAGGGATTTGTATAGCATACACAGTTTAATACTgctgtatttttcattctttttcttttttcaaacacaTATGAATTTCTACcatagttaataaaataaataaaaaagtctattgcagttttttttttttttgtggtctaggtctactactactaccactacttactgttattattgaatttagtaaaacaataaaatactcaTGTAATATGTAGTTTTTCACTTTCACAGATGTTCTTAAGTCACTCGgatgtattttcaaaacaaaagtatatCTCAATAGCCATGAATCACTGTATAGCTAATGTTTAAAGTGATGAACTAGTTGCAGTGGCATTTTAATATGCCATCTTTTGTAACTTCAACTAAATCCAttatgctttcaaaaacatacTGAATTCTTACACATATATCATGCAGTCTTTCAGgctcataaataaattaaagcaaaacctaaatatgtatacacattatttttgcagttgattattaaacaaacaatgcaaaagGTATTAATGTCAGAAACCAggatatatttgtttccattacATTAGACAGGGGCAAACCTttcatttccaaaatatattgaatCTAGAATCTAAGCCTGGACCAAATTGACCTAATGTAAACCCACTATATGGTTTAAacttaaatctgcatttttttgtacttAGG

Function

symbol description
ptn Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

NR:

description
PREDICTED: pleiotrophin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142323 True 3328 TUCP 0.33 5 27402600 27527348

Neighbor

gene id symbol gene type direction distance location
AMCG00006932 NA coding downstream 93430 27308892 ~ 27309170 (-)
AMCG00006929 mtpn,LOC106576424 coding downstream 762652 26608543 ~ 26639948 (-)
AMCG00006926 NA coding downstream 1041149 26192389 ~ 26361451 (-)
AMCG00006924 NA coding downstream 1216838 26184251 ~ 26185762 (-)
AMCG00006925 NA coding downstream 1261781 26134171 ~ 26140819 (-)
AMCG00006935 NA coding upstream 109872 27637220 ~ 27649919 (-)
AMCG00006934 NA coding upstream 141438 27668786 ~ 27677200 (-)
AMCG00006938 NA coding upstream 278135 27805483 ~ 27824074 (-)
AMCG00006939 itfg2 coding upstream 437619 27964967 ~ 27970379 (-)
AMCG00006941 NA coding upstream 475154 28002502 ~ 28015328 (-)
G113631 LOC100846954 non-coding downstream 39570 27270459 ~ 27363030 (-)
G113587 NA non-coding downstream 237202 27165179 ~ 27165398 (-)
G113586 NA non-coding downstream 246743 27155535 ~ 27155857 (-)
G113573 NA non-coding downstream 343006 27059369 ~ 27059594 (-)
G113479 NA non-coding downstream 1364277 26001446 ~ 26038323 (-)
G113667 NA non-coding upstream 272590 27799938 ~ 27800294 (-)
G113673 NA non-coding upstream 275142 27802490 ~ 27805153 (-)
G113681 NA non-coding upstream 328763 27856111 ~ 27856461 (-)
G113722 NA non-coding upstream 531013 28058361 ~ 28058567 (-)
G113723 NA non-coding upstream 531371 28058719 ~ 28058931 (-)
G113530 NA other downstream 901919 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 3831467 23568155 ~ 23571133 (-)
G113050 NA other downstream 3995393 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 4444294 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 5204936 22130495 ~ 22197664 (-)
G113775 LOC100846954 other upstream 739914 28267262 ~ 28292598 (-)
G113833 NA other upstream 1183871 28711219 ~ 28812548 (-)

Expression


Co-expression Network