G113673


Basic Information

Item Value
gene id G113673
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27802490 ~ 27805153 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142359
AGGGGCATGCTCCCCcgggagattttttttgtagaacAGCTGTCAGGAGGtcagctttatttttgtttagtgtGACAACAAATCAAGAGTAgaatttttaatgtgtgtgcaATGATGAAATTGTATTCTAGTTTATCCACTTGGTCTAAATATTGAAAAGATAAATCTAGGCAACAAATAGATAGTAAGACATgcttattataataaatgtgctaTAGATATTGTGACAGGTTGGGGGGGCCTGTCACAAAAAGGGgttgtatgtaggcggggtctggtagggagtagggaggcaggcagaggcaCTAACAGtcattaactaacaaacaaacactaataataataacaccaggCAAGCAGAAGTACAAAAAGGATCAGGCAGGTTCGTAATCAAAGACCGTTACCAgggggaggttgtcagacagtctgTGGTTCAAGATGGAGAAtagtccaggtccagaaaaagagtctcaagccagtgaatccgtcaacttGTAATTTCACCCTTCTTTCTTCTGCTACCTCCAGACAAGAATACACTCACTGGTCAGTTTTCTCCTCCACTAAAAGATCTGGCCTGCCCCTGGCCATGCCcctcaccacccccccccccccccctcaagaGTGAAGCCAGGGGTGCACAAGACTATGGGCATACCAAGGCCAAGCCCCCCCTCCAAAAGGGCTGAAGAGCCAGATGGGGTCTCCAGCTGCTGGGTCATCCTTATGGTGGTTATGCCATTCCCACATGTCCTGTCCTACGTTTGTGGCCCATCTAATTCTTGGGGTGGACTGGTATGTCCTCGGTTTCACTGAAGGCAACTCCACCCTAGTGTCAAGTCCAGGGTAAGGACTTGTTGATTCCTGGTCCCTCGAGGAACCAAGCTTGTCTGGCGGAGACCTCTCCGCTGCCACAGCGTCGGTTCGCTCCCCCCAGTCTCTGGTCTGGCCTGGAGACACAGCGGGTCCTGAGCACTCTGAGGTTCCTGGTGGATTAACTGTGGTGTCTCAGTCTCCTCTGCTGCGGTCAGGAACTCTGGCTGTCCAGGAAACCTGATGGAGGAAGCACAAGAGTCTCACCCTCTGGCTGCTGTGACTCCTCTGCCTTCTGGGTTCCCGACTGTGGTGGCTGCAGTTCCTGTTGCAGCTGCTCCGGCTGCTCCGGCTGCTCTGGCTGCTCTCCAGATTCAGGGCCTGGTATAATCTTTCCCTCTGATTCATTAAAGGGGTAAACAGGTGATGCCTTTTCCTGGGTTGTAGGCACATCCTGTTCTGGTGTGACCTCTGAGGAGACAGGCGGCAACTCTATCCTGAAGTCTTCTTCTCCTGGTAGCTCCTCAGTGCTCAGGGCCAGACTCTTCTGCCAGGCATAGTGGTGGACACTCACCCTTGGAGTGGGACGAGGAAGGCAGCACATCTTCCTCATCTTCAGGACCCTTGCGCTTCACCCTCTGGGGCTCTGGACACTTGGGCTCCTCCCTCTTGGGCACTGGACACTCGGGCCTCACCCTCTATGGCTCTGGGGGCAGGAACACCCGGCCCTCTGTGGCTCTGGGGGCAGGAATACCTCGGACCTCTGTGGCTCCGAGTCTTGGCACGGCCAGAGGCTCTCTTGCTCTTGCACTGCTGATTGGCTcgctatgtagctgtaatgaagattgatgggagggtgggatttgatATTTCTTGTCTAAACTAGAATGTATCATGGCTAACAATGGTCGCATTCgtgtagtgcagatttccgcagttccgCAGATCTctaccaatgggatcggtgggattctacAGATCTGTGTaaatctgcactacaagaacacgaccaaTGGCTTTTTCACAGAGAAGTtctgcatttaaatactttgacaaagtaaatgaaaacactgttaagtgtataatatatgcagtgcaattaaactaccacaaatctacagctgttATGTTAACCCACATAAAAGCCAAACGCCCTTCTGTGAAACttgcaatgacagaaaaggaaagagcaccacaacaaactaattaaattattaagcTACATACATAgcaagctgtttttatttattttgtattcactgaaACTCGAACGCACAGGTATATTTCAGAACACAGAAAGGCAGtctgtgttgagtgtggtttggaaatgtggaaaagcaaatagtttagttaagtagattgtataaattaccTAGAtagatagtctaatacattttatatttcgctgttatgaccggaaaacattaccacaaggacgctaatgttaaggcattttcattgcatctcacattgctaaactattattgaatgaaaattatattaataggCCTATAcaaataggcctatataaaaagaaaaacatttcggtcggtcggtcagttacagctgtaattgcaaaatattcctttataaacaaacagtcacaacctttatagttaatttgaaattgtggttaaaaaaaaagtgagaataCCGGGAAACCGTAATACGAGAGTCTGACATGAGATGAGATGcttgagagttgacaggtctggttattgctgctgttactatgccatttccatttgtcttctaataggaaggtatttgtacatagcctaatgtttatttaacaaagttgttgtgttagataagtattttaaaataaagttcacaaCTTTCTGCAATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142359 True 2664 lncRNA 0.46 1 27802490 27805153

Neighbor

gene id symbol gene type direction distance location
AMCG00006934 NA coding downstream 125290 27668786 ~ 27677200 (-)
AMCG00006935 NA coding downstream 152571 27637220 ~ 27649919 (-)
AMCG00006932 NA coding downstream 493320 27308892 ~ 27309170 (-)
AMCG00006929 mtpn,LOC106576424 coding downstream 1162542 26608543 ~ 26639948 (-)
AMCG00006926 NA coding downstream 1441039 26192389 ~ 26361451 (-)
AMCG00006938 NA coding upstream 330 27805483 ~ 27824074 (-)
AMCG00006939 itfg2 coding upstream 159814 27964967 ~ 27970379 (-)
AMCG00006941 NA coding upstream 197349 28002502 ~ 28015328 (-)
AMCG00006940 NA coding upstream 211510 28016663 ~ 28047076 (-)
AMCG00006948 klhl42,LOC106609448,LOC106576288 coding upstream 336104 28141257 ~ 28144216 (-)
G113667 NA non-coding downstream 2196 27799938 ~ 27800294 (-)
G113631 LOC100846954 non-coding downstream 439460 27270459 ~ 27363030 (-)
G113587 NA non-coding downstream 637092 27165179 ~ 27165398 (-)
G113586 NA non-coding downstream 646633 27155535 ~ 27155857 (-)
G113573 NA non-coding downstream 742896 27059369 ~ 27059594 (-)
G113681 NA non-coding upstream 50958 27856111 ~ 27856461 (-)
G113722 NA non-coding upstream 253208 28058361 ~ 28058567 (-)
G113723 NA non-coding upstream 253566 28058719 ~ 28058931 (-)
G113724 NA non-coding upstream 253975 28059128 ~ 28076291 (-)
G113799 NA non-coding upstream 602253 28407406 ~ 28407839 (-)
G113645 ptn,LOC106609498 other downstream 275142 27402600 ~ 27527348 (-)
G113530 NA other downstream 1301809 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 4231357 23568155 ~ 23571133 (-)
G113050 NA other downstream 4395283 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 4844184 22953176 ~ 22958306 (-)
G113775 LOC100846954 other upstream 462109 28267262 ~ 28292598 (-)
G113833 NA other upstream 906066 28711219 ~ 28812548 (-)

Expression


Co-expression Network