G113717 (LOC107575789)


Basic Information

Item Value
gene id G113717
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28077953 ~ 28078459 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142407
ggggaccttgcgggcgctgcaggatttcagtccttcatggcgtagtgtgttaccaattgttttcttggtgactattgtcccagctgccttgagatcattaacaagatccttccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttcccaccaagctgcttggcgatgggcttgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacagctGCCttgtccctttaagagagtgctcatAATCTCAGCTCgatacctgtataaaagacacctgggaacCAGAAATCTTGCtaattgataggggatcaaa

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142407 True 487 lncRNA 0.48 2 28077953 28078459

Neighbor

gene id symbol gene type direction distance location
AMCG00006942 NA coding upstream 142164 27914300 ~ 27935789 (+)
AMCG00006950 NA coding upstream 167555 27909206 ~ 27910398 (+)
AMCG00006937 NA coding upstream 246897 27811185 ~ 27831056 (+)
AMCG00006936 NA coding upstream 450620 27616135 ~ 27627333 (+)
AMCG00006933 NA coding upstream 752233 27324233 ~ 27325720 (+)
AMCG00006943 NA coding downstream 27149 28105608 ~ 28128135 (+)
AMCG00006944 cwf19l1 coding downstream 69379 28147838 ~ 28188827 (+)
AMCG00006947 NA coding downstream 214561 28293020 ~ 28331354 (+)
AMCG00006945 NA coding downstream 254009 28332468 ~ 28364610 (+)
AMCG00006946 NA coding downstream 289665 28368124 ~ 28401071 (+)
G113711 NA non-coding upstream 17363 28059124 ~ 28060590 (+)
G113680 NA non-coding upstream 221491 27856114 ~ 27856462 (+)
G113607 LOC103376870 non-coding upstream 675985 27380923 ~ 27401968 (+)
G113596 LOC100846954,LOC107575789 non-coding upstream 714909 27268971 ~ 27363044 (+)
G113594 NA non-coding upstream 794633 27262231 ~ 27283320 (+)
G113741 NA non-coding downstream 59892 28138351 ~ 28138938 (+)
G113743 klhl42,LOC106576288,LOC106609448 non-coding downstream 62824 28141283 ~ 28142251 (+)
G113747 NA non-coding downstream 122083 28200542 ~ 28204108 (+)
G113760 NA non-coding downstream 137541 28216000 ~ 28216235 (+)
G113805 LOC100846954 non-coding downstream 540547 28619006 ~ 28619812 (+)
G113400 NA other upstream 2245011 25815055 ~ 25832942 (+)
G113369 LOC108442871 other upstream 2459508 25618067 ~ 25618445 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other upstream 3490834 24509003 ~ 24587119 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other upstream 3742037 24304696 ~ 24335916 (+)
AMCG00006878 ndufb2,LOC102790702 other upstream 4041841 24032089 ~ 24036112 (+)

Expression


Co-expression Network