G113724


Basic Information

Item Value
gene id G113724
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28059128 ~ 28076291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142419
CCCGCCATATTTCCTTACTAGTGTTTTGCTTTATGTTTGTGATGTGTAATtcgtttttttatatataatattttgttttataatgcgAGAAGTGCGTATTTGATATCGCAGTATGTATTGGAGTTTTAATTTGAAGTCGTTCAATTTATGATCATCCAGTGataaaattataatgaatatgaGGATGTAGTACAGAACTACTGCAGAGATTCggatttaaacatatatatacgcAAAAATGAGGAGCAGTTCCTCCACATCTTTGGCCCAAGCAAGAAGTCTGGGTTCTGTTCGTCTTGGCAGCAGTCCACTGCTTTTCCAAGGCTCAGCCCAAGCGCTAAGCCTCTTGGATATGGCTGTCGAACATCTAATGGTGTTGCGAGATTTTAAGGGGGGCCTTGAGTCTTGTGAAAAAGGTCTGGACAGCCTCAGCAGTCTCCCTGAGCATGAGGACACAACCAGccATTCCCTCAGCTTTTCCTTGGATCTCTGACCTTTTCCAGATGTTTAGACAGATGTGGGAGGCAATGTTTGCACCATATTACAGAGTGTCTGTCGCTTGCTGAGTTACATGACAGTTTCTCTCGCATTACTTTCTTCAACCCAGgtgaatgtaaattaatatttgcacCCAATAGACAAGTAACTTGGCGTAAAGTGTCTCTGTAGTGTTCCATGTATGCTTCTCAGAAAATtctatgctttgtatttttcttacgattatttttttttgtaaataagctctgaaatgaaagcctgtggagaagcaaaataaacaacctAAAACC
>TU142420
catacaaaatcagcaggggatcaaatacttttttccctcactgtacatgaaaTATACATGTGTGACCACCTAACTGATATTGCTATATTATTGTGCTCGGGAGCATGTCTTTTtgtcacacacttttcatcaccagcaACTATTTATCACACAGATTTCATCATCAGCGTTGGTTCATCACCATTTTGCGTATTCAACAGCAATATGCAATATGCGTCTCTTAATGTCCTACGATCCcaaaactgacttttttctagagctgtatgTTCATAGTCTGACATTAGTGAGAGctaaatgtatatatggatTTTATCCAAACAagttaaattactgttttattattattattattaagggaGAACAGACGGGGATAGAGAGGAAATGCTTAAAGGCAAAGGCAAACATCTTGCAACACTTACATCCCAGGTTTTGACAAAGTCTGATCTATTGTAGTCTCTAGTATaacttattgtttaattaaacccTGTTGATTTGATTGAACTCAAATAAGCAATTGAATTAAATTCAGcaataaatatacagaacatgATAAAATGATGGAATAAAGCAcacaaataaagtgaaaatattgTTATAGAGAAAGTTACATACCAATCttttatattatacttttttacTGAGGATTTACTTTTGCTAAATCTCTTAGTccaattttaattgttttcttcaattaagtaaattagaATATTTACATGAACATTAGATTTCTGAGATGTTTCGGGGAAAAAAATTCGGCAAAGGTTGTAGCGTTAGTTGTCCAAGAAATGCCCCACCTTAACATTAtgtaatattatgtatatttctataaatacatttatatggtGTGCTCCAGATGTGCAAATGTGTAATCCCTTTACTGcatattctttttaaaaataggtaaatacataatacataaagtACAATGTTTGAAGAACAATTTAATATGGAATGCATTTAGGACTTGCTTATactaaacaatttaaatcaataaataactgttccactttgtttattttccagccATTCCCTCAGCTTTTCCTTGGATCTCTGACCTTTTCCAGATGTTTAGACAGATGTGGGAGGCAATGTTTGCACCATATTACAGAGTGTCTGTCGCTTGCTGAGTTACATGACAGTTTCTCTCGCATTACTTTCTTCAACCCAGgtgaatgtaaattaatatttgcacCCAATAGACAAGTAACTTGGCGTAAAGTGTCTCTGTAGTGTTCCATGTATGCTTCTCAGAAAATtctatgctttgtatttttcttacgattatttttttttgtaaataagctctgaaatgaaagcctgtggagaagcaaaataaacaacctAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142419 False 788 lncRNA 0.39 3 28059128 28076291
TU142420 True 1349 lncRNA 0.32 3 28059128 28060592

Neighbor

gene id symbol gene type direction distance location
AMCG00006940 NA coding downstream 12052 28016663 ~ 28047076 (-)
AMCG00006941 NA coding downstream 43800 28002502 ~ 28015328 (-)
AMCG00006939 itfg2 coding downstream 88749 27964967 ~ 27970379 (-)
AMCG00006938 NA coding downstream 235054 27805483 ~ 27824074 (-)
AMCG00006934 NA coding downstream 381928 27668786 ~ 27677200 (-)
AMCG00006948 klhl42,LOC106609448,LOC106576288 coding upstream 64966 28141257 ~ 28144216 (-)
AMCG00006949 NA coding upstream 141322 28217613 ~ 28223587 (-)
AMCG00006955 NA coding upstream 673971 28750262 ~ 28811479 (-)
AMCG00006957 NA coding upstream 791611 28867902 ~ 28868926 (-)
AMCG00006956 NA coding upstream 804026 28880317 ~ 28892493 (-)
G113723 NA non-coding downstream 197 28058719 ~ 28058931 (-)
G113722 NA non-coding downstream 561 28058361 ~ 28058567 (-)
G113681 NA non-coding downstream 202667 27856111 ~ 27856461 (-)
G113673 NA non-coding downstream 253975 27802490 ~ 27805153 (-)
G113667 NA non-coding downstream 258834 27799938 ~ 27800294 (-)
G113799 NA non-coding upstream 331115 28407406 ~ 28407839 (-)
G113823 NA non-coding upstream 564838 28641129 ~ 28641437 (-)
G113876 NA non-coding upstream 787588 28863879 ~ 28867820 (-)
G113905 NA non-coding upstream 995890 29072181 ~ 29074799 (-)
G113645 ptn,LOC106609498 other downstream 531780 27402600 ~ 27527348 (-)
G113530 NA other downstream 1558447 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 4487995 23568155 ~ 23571133 (-)
G113050 NA other downstream 4651921 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 5100822 22953176 ~ 22958306 (-)
G113775 LOC100846954 other upstream 190971 28267262 ~ 28292598 (-)
G113833 NA other upstream 634928 28711219 ~ 28812548 (-)

Expression


Co-expression Network