G113775 (LOC100846954)


Basic Information

Item Value
gene id G113775
gene name LOC100846954
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28267262 ~ 28292598 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142484
ctcaactcattacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacataAGGCTGGAATGGGTTACAAAGACCAtcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctcccttggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagctcagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccacAAGATCCCCCTGCTCAAGACTGCACATGTAGAGGcctgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttcctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgtg
>TU142485
ctcaactcattacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacataAGGCTGGAATGGGTTACAAAGACCAtcaccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctcccttggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagctcagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccacAAGATCCCCCTGCTCAAGACTGCACATGTAGAGGcctgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaactgttgtggtcagatgagaccaaaatcgagctctttggcatcaactct

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142484 True 827 TUCP 0.46 2 28291455 28292598
TU142485 False 770 TUCP 0.47 2 28267262 28292598

Neighbor

gene id symbol gene type direction distance location
AMCG00006949 NA coding downstream 43675 28217613 ~ 28223587 (-)
AMCG00006948 klhl42,LOC106609448,LOC106576288 coding downstream 123046 28141257 ~ 28144216 (-)
AMCG00006940 NA coding downstream 220186 28016663 ~ 28047076 (-)
AMCG00006941 NA coding downstream 251934 28002502 ~ 28015328 (-)
AMCG00006939 itfg2 coding downstream 296883 27964967 ~ 27970379 (-)
AMCG00006955 NA coding upstream 457664 28750262 ~ 28811479 (-)
AMCG00006957 NA coding upstream 575304 28867902 ~ 28868926 (-)
AMCG00006956 NA coding upstream 587719 28880317 ~ 28892493 (-)
AMCG00006958 NA coding upstream 609743 28902341 ~ 28906211 (-)
AMCG00006959 wnk1b coding upstream 638432 28931030 ~ 28966524 (-)
G113724 NA non-coding downstream 190971 28059128 ~ 28076291 (-)
G113723 NA non-coding downstream 208331 28058719 ~ 28058931 (-)
G113722 NA non-coding downstream 208695 28058361 ~ 28058567 (-)
G113681 NA non-coding downstream 410801 27856111 ~ 27856461 (-)
G113673 NA non-coding downstream 462109 27802490 ~ 27805153 (-)
G113799 NA non-coding upstream 114808 28407406 ~ 28407839 (-)
G113823 NA non-coding upstream 348531 28641129 ~ 28641437 (-)
G113876 NA non-coding upstream 571281 28863879 ~ 28867820 (-)
G113905 NA non-coding upstream 779583 29072181 ~ 29074799 (-)
G113645 ptn,LOC106609498 other downstream 739914 27402600 ~ 27527348 (-)
G113530 NA other downstream 1766581 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 4696129 23568155 ~ 23571133 (-)
G113050 NA other downstream 4860055 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 5308956 22953176 ~ 22958306 (-)
G113833 NA other upstream 418621 28711219 ~ 28812548 (-)

Expression


Co-expression Network