G113905


Basic Information

Item Value
gene id G113905
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 29072181 ~ 29074799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142623
ATAACatatcatttttatatgtaaatcAATGATCCAAAGCTAACTGCCAAGTGGGCAATACAATTTCTGGAAAACTGAAGGATGAAAGTGGTTCATTTACatgacctaaatccaattgaacACTCTGGGAGTGGGTGGAAACTCATACTAAAATCTGTCAAAATCCTTGTGAGATGTATACACAGATACAGTGccagtattcaccccccttggcatttttcctattttgttgccttacaacctggaattaaaattgattttttggggtttgtatcatttgatttacacaacatgcctaccactttgaggATGCAAAgtatttgttattgtgaaacaaacaagaaataagacaaaaaaaaaacatagaaaatgtaagcgtgcataactattcaccccctaatgtcaatactttgtagagtcaccttttgcagcaattacagctgcaagtctcttggggtatgtctctataagcttggcacatctagccactgggatttttgcccattcttcaaggcaaaactgctccagctccttcaagttggatgggttccgctggtgtacagcaatctttaaatCATATCATAGGTTCTCAATTgaagtctgggctttgactaggccattccaagacatttaaatgtttccccatAAACCACTCGaatgttgctttagcagtatgcttagggtcattgtcctgctggaaggtgaacctccgtcccagtctcaaatctctggaagactgaaacaggtttccctcaagaatttccctgtatttaacaccatccatcattccttcaattctgaccagtttcccagtccctcccgatgaaaaacatccccacagcatgatgctgccgccaccatgcttcactgtggggatggtgttctcggggtgatgagaggtttTGGGCGTGCGCCAGacatagcattttccttgatggcccAAAAGCTCagttttagtctcatctgaccagagtaccttcttctaTACATTTgaggagtctcccacatgccttttggcgaacagcaaacgtatttgcttatttttttctttaagcaatggcttttttctggtcactcttccgtaaagcccagctctgtggcgGGTACAGCTTAAACTGGTCCTAAGGACAGATACTCCAAactccgctgtggagctttgcatctccttcagggttatctttggtctctttgttgcctctctgattaatgccctccttgcctggtctgtgagttttggtgggcggccctctctttccattttttaataatggatttaatggtgctctgtgggatgttcaaagtttcggatatttttttataacccagccctgatctgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgctgcttgcttggtggtgccctttgctcagtggtgttgcagatgCTGGGGCCTTTATATACTGGGTgcatatatactgagatcatgtgacagatcatgtgacacttagattagacacaggtggactttaatATGTGAcctctgaaggtaattggttgcaccagatcttatttaggggcttcatagcaaagggggtgaatacatatgcacgcaccacttttccgtttttaattttttaaattttttctgaacaagttattttttattttttttcaaaacaagttattttttaaatttcacttcaccaatttggactactTTATGTATGttcattacatgaaatccaaatacaaatctgtttaaattacaggttgtaatgcaacaaaataggaaaaatgccaaggaaaaaaaaaggggggtgaatactttcgcaaggcactgtatatagcTACAAAATGCTTGTATCATACTCCAccacacatatgtgtgtgtgtcattgccatttggaaaatgtaaagGACTTCTATACAGTACCATACtacaaatcaagaaaaaaatatttatttagcttcACAGTCAAATTAAAGGTGCTGCTCATTGTATTGTCCACCACAAAACAAATTGGTCCTTTTCAAAGTTGTTGTTAGTTTCCTAGTCAGATGGGCAGGCAAACAGGCAAAGTAGATAGATTGGTAGAGGGTCAGATGTCTACCCaaaattaatatgtttaatcACTGCCTCTGATTGTCGTAGTCCTTTtggtcatttatttaaaataatcttacaAGATCCTCTTTTACAGATGGTACTTTGCAATGAGAGGAGGTGGTGGTGAAGACAGATCTAAAACTTCACAATCTATTGTACTCAGCAGAGCTGAACAAAGATGATATATGGACACTGTTGTGGAACATGACAACTTACTTTACTCGATATACAATTTAATATGACTGTTTGTTAGTGCATAACATGATTGCATATTGTCAAGTGTGTATTGTAACTAAGCTAACATTGGATTTCgaaggtttaatttgttttgtatagcCTCCCTTTCTGCATTTAGGAAAGACATTTTACACATGAATGCCATAAGTGCCCATAAGTACTCAAGTACTTATCTTAATCTTATTCaagtttattacattaattttaatttggctATGCATACACATCTATccacttacactcacctaaaggattattaggaacacctgttcaatttctcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142623 True 2619 lncRNA 0.39 1 29072181 29074799

Neighbor

gene id symbol gene type direction distance location
AMCG00006960 NA coding downstream 39284 29027412 ~ 29032897 (-)
AMCG00006959 wnk1b coding downstream 105657 28931030 ~ 28966524 (-)
AMCG00006958 NA coding downstream 165970 28902341 ~ 28906211 (-)
AMCG00006956 NA coding downstream 179688 28880317 ~ 28892493 (-)
AMCG00006957 NA coding downstream 203255 28867902 ~ 28868926 (-)
AMCG00006967 NA coding upstream 93764 29168563 ~ 29257106 (-)
G113876 NA non-coding downstream 204361 28863879 ~ 28867820 (-)
G113823 NA non-coding downstream 430744 28641129 ~ 28641437 (-)
G113799 NA non-coding downstream 664342 28407406 ~ 28407839 (-)
G113724 NA non-coding downstream 995890 28059128 ~ 28076291 (-)
G113723 NA non-coding downstream 1013250 28058719 ~ 28058931 (-)
G113833 NA other downstream 259633 28711219 ~ 28812548 (-)
G113775 LOC100846954 other downstream 779583 28267262 ~ 28292598 (-)
G113645 ptn,LOC106609498 other downstream 1544833 27402600 ~ 27527348 (-)
G113530 NA other downstream 2571500 26500015 ~ 26500681 (-)
AMCG00006866 NA other downstream 5501048 23568155 ~ 23571133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1016932 NA non-coding NC_048575.1 CM023229.2 74553587 ~ 74557100 (+)
eurasian perch (Perca fluviatilis) G130613 NA non-coding NC_053124.1 CM020921.1 1584094 ~ 1584606 (+)