AMCG00006979


Basic Information

Item Value
gene id AMCG00006979
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 78452 ~ 95292 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006979
GCGGGTTgtcgcctctctctctctttttctttcactttccgTCTCTTCTGCACCGTTTTCCTGAGAAGAGGGAGCGAGCGCACTTCGACAACTTTTTCGTTTCCTACGCGATGTGTTTCTGCAGACGATGAGTGACCAGACCCGCGCCATGACCTCTGACCCCGACGACGACGACCCCTACCTGTTCTCCTCCCCCGTGCTGCCCTCTGACCCCCGCTTCCTGGCCACAGTCGCCAATGGCTACGTGGGCACGGCGGTGTTCAGTGACATCATGCATGTGGGTGGAGTTTACAGTGGGACGGGGGGGCACTGTCACCGTGCTGACGTGCCCTGTCCGCTGGGGGTGCAGCTACAGCTGGGAGGGGCAGAGAGGCAGGAGCTTAAACACTGCTACACCCTGGACACCCGCAGAGTGCAGCTCCTCAGCTCTTTCAAGCCTCAAAGCGATGATATCATCTTCCAGCCAGCGCCTGATTACAGGGGGGGGCGGCATATCTTCGGACAGACTATAACCCCAGAGCTGTGTGGAGACCCCCGTCCCAGCATACACCTGCTGTGGACCCCCGTGCCCCCCAGCCTTATGCTGCAGGCTGGCCAGAGCAAGGCATGCTGGGTGTTCCTGGTGGCTGTGGCGGACAGTGCTGAGCATGCTCAGAACACCTACTCCCTCGGTCTGGACTTGATTGACTCAGGGGACCTGGGCCCCTCCCACCACAGGGTGTGGGCGGAGCTCTGGGCAGGAAGTGCAGTGGAGTTGTCAGGCCCCGCCCCCCTGAGGagagctgtgattggctgccTGTACTACCTGCTCAGTGCCTTCCTGCCCCTTCATGATACGCACTTCCAGTTCGGAGGGGTGAGCCCTGGGGGGCTGTCCAATGGGAGGAGAGGGCAGGACTACTGGGGTCATGTGTTCTGGGACCAGgactcGTGGGTGTACCCCGCCGTGTGTCTGTTCTACCCTGAGCTGGGCCGGCAGGTGCTGCAATACCGGATCAGAACCCTGAGGGGGGCCAAGCACAACGCTCAGGAGCAGGGCTatgaggGTGTGAAGTTCCCATGGGAGAGCGCCGTGTCAGGGAGGGAGGTGTGTACAGAGCCGGTGTACGGCCTGCAGGAGATCCACATCAATGGAGACGTCAGCCTGGCCTTCAGACAGTACCTGCACctcacacagGATCTGTCCCTGTTCACAGAGGGGGGGGGCTGGGAGGTGGTGAGGGGCGTGGCTGAGTACTGGGCCTCCAGAGTCACCTGGAGCCAAGAGGAGCAGAGCTACCACCTCACAGTGCTGCAGGTCCCGCACCCCTCACAGTGGCAGGAAATcgctgacaagatcaagatcccCTTCGACCCGGAAGGGGTGTTTGCAGTGGGCTGGCTGGAGCTGGGGGAAGTGTCTCGTGCTCAGGAGCAGCTGAATAAGAGCTACAGGAACATACAGGAGCCATTCCAGgtgtggAGTGAGCAGGCAGATGGGGGTGGGGCTGTAAACTTCCTGACTGGAATGGGTGGCTTCCTGCAGGCAGTGCTGTATGGATACACAGGCTTCcgtatTAAGGTGGACTGCCTGACCTTTGACCCCGTTCTCCCGAGTGACATCAGCGAGCTGCGGCTCAGAGGGGTGTGTTACCTCGGAAACAAGCTGGACTGGCGGTTCGGGGGGGGGAGCATGTCCGTGTGTGTGACGATGGTGGGGGGGTCGCAGGGGCACCTGCCACACTGGGACCTGCAGCTGAGTGTGAGCTCAGGAGAGACCTACCCCCTCGCACTGGGCCGGCTGGTGCATGTTCCTATGGGGCCAGGGGAGCTGAGGAGACAGGTCTCTGGCTGCCGGCTGCTGTAGCTACGAAGTtgacccccaccccctgctgGACCGGACCGGACCGGACCGGACTGCAATGAAGACCCGGTGTCTCCAGAACAACCTTGCTGTACATtctaaacaataaaaagttCCACTGACATTCAGCTTTGTTGCAGACGACCAGGAAGTGGCCACACAGCAGGGCTCTGGGGCTCTTGGATCACATTACAGGGCTAACCCTCAGTACAGACACAAAGGGCTgtgtttaattactgtaattgtggtttaataaaagtataattgtTAGCACTGATAcagatattaaatgtattttgtgtttacactctttattgtgtattttacattttcagctcatcattgtgtgtgtgagtagaGATCATGCCGCTGCAGATTCACAGCCTGACTGAAACACAGCGCAGCGCACAGGGCGGGGCTCTGAGATCAGCTCGGATTGCCATTGGCTGGTTTGAATCTGTGACGCAGGGGTTAGGCTGGATTTTGCGGAAGAgagagattgtttttgttgtggctTCCTGTGTGCAGAGCCAGTCAGACGGCATTAACTCATTCATGACAGTTCAGGGAGGAGGAAGGGACGCCATGTTGATTTGACTCCTCTTCCATTGCGTGCTTTATTAATTGGTACGACACGCCTGCGcagtttttatacttttattccAAGCGTTCAAAGATACTcgagaaaaaatacaattcgcTTAATATCACATATATAATGTAGTAGATAATCG

Function

GO: NA

KEGG:

id description
K22078 PGGHG, ATHL1; protein-glucosylgalactosylhydroxylysine glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006979 True 2577 mRNA 0.57 12 78452 95292

Neighbor

gene id symbol gene type direction distance location
AMCG00006980 NA coding downstream 40 66755 ~ 78412 (-)
AMCG00006982 NA coding downstream 21024 55592 ~ 57428 (-)
AMCG00006972 LOC108429468 coding downstream 30101 40523 ~ 48351 (-)
AMCG00006971 NA coding downstream 53360 19399 ~ 25092 (-)
AMCG00006974 NA coding downstream 76310 593 ~ 2142 (-)
AMCG00006977 NA coding upstream 17885 113177 ~ 125163 (-)
AMCG00006981 NA coding upstream 32196 127488 ~ 137733 (-)
AMCG00006978 NA coding upstream 45244 140536 ~ 143181 (-)
AMCG00006988 NA coding upstream 100012 195304 ~ 198829 (-)
AMCG00006987 ddb1 coding upstream 130803 226095 ~ 241460 (-)
G20353 NA non-coding upstream 72642 167934 ~ 182823 (-)
G20355 NA non-coding upstream 88465 183757 ~ 188858 (-)
G20395 NA non-coding upstream 163799 259091 ~ 259480 (-)
G20412 NA non-coding upstream 209297 304589 ~ 306860 (-)
G20424 NA non-coding upstream 212717 308009 ~ 309826 (-)
G20388 ddb1,LOC107681355 other upstream 135032 230324 ~ 232494 (-)
G20397 LOC100846954 other upstream 164291 259583 ~ 260236 (-)
AMCG00006997 NA other upstream 261326 356618 ~ 362294 (-)
AMCG00007001 NA other upstream 313547 408839 ~ 414126 (-)
G20609 NA other upstream 750637 845929 ~ 917829 (-)

Expression


Co-expression Network