AMCG00007003


Basic Information

Item Value
gene id AMCG00007003
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 473858 ~ 478272 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007003
ATGGTAACCAGCCCCAGGGAGAGCTCTCCCAGCACACCATGTGTCTGCATCTTTCAAGGGAAGAAGATCAGCCCTGGCAGCTTCATATACAACACAACGGACAGTGCAGGGTGGTGTTACACTGCCTTCTGTAATGCCACCTGTGGGGTTGATAGACATGTGACAGAATGCCACTCCACCACCACTGCCCCGACAACCCCTGCAAAAACAACCACACCTGGAACGACAGCTGCCCCCTCGACTAGAGGAACCCCAGAGACCACCAGCCCTGGAGTGCCCACCAACCCTGCTCCTGAGTGTGCTGCCCTGACACCTCCCCGAAAGCTGAACGAGACGTGGCAGATCGACAGGTGCACCCATGCCACCTGCCAAGGCAACAACCAGATCTCGCTGAAGCCCGTTCAATGCAGCCCAGTGAGAAAACTGACCTGCGCCAGCGGCCGGCCTGCTCTCAAGGTGTACGACCAGGACGGCTGCTGCTTCCAGTATGAGTGCGAGTGTGTCTGTGCCAGCTGGGGTTACCAGCACCACATGACGTTCGACGGGACATACTACCCCTACAGCAGCCAGTGCAGTCACGTGCTGGTGCAACAGATCAGCCCCAAGTACGACAACTTCCACATCTACGTGGACGACAATGACTGCTACGGCCAGCAGAGCGGGCTCTGCTCCCGCACCCTGCGCATCTTCTACAGGGGCAGCGAAGTCCGGCTCACCCAGATGAACAGGAAGAATATGGTGATCTTCAACGGTAAACAAGTCTTCCCCAACCTATACAAAAACGGCTTCAAGATCTTCTCCACAGGCATCAGCATCCAAGTGCAGATCATGGATTTCAATGTGCTAGTGGTGTACGCAGGCATGGTCTCCACAGTCACTGTGTCATCCAGACTGTTCTCCCACAACACGGAGGGACTCTGTGGCACCTGCACTAACAACAGGCAGGAGGACTGCCGGCAGCCCAGTGGCGTCACGGCCGCTTCCTGCCCCGAGATGGTGAAGGAGTGGCTGGTGCCTGGACAGAACAGATCGGCCTGTGACAACACTGCTCCCACCACCAGGGCACCAACAACCACCATGCCAGCTCCCTCACCCATGACTGGCACTCCCAGCACTGCACAGTCCACAGCAACACCAACAACTCCAACGACCGCTGTGTCCAACCCCCGGCCCTCATGCGAGGCCCCCCTGTGCGAGCTCCTCAAGAGCAAACTATTCCAGGCCTGCCACTCGCTGGTCCCTCCAGAGCCCTTCTACACGTCCTGTGTGCTGGACACCTGTGAGCTGAGCGAGGTGGATGCCGTGTGCAGTGATCTGCAGAGTTACGCCGGCCTGTGTGCTGCGCAGGGAGTCTGTGTGGACTGGAGGAACAGCACACAGGGGAAATGCTCCTCTAAGGAGTACAGAGCCTGTGCGCCCGAGGTGGAGCTCACCTGCAATCACAGGCATAATGAGGAATTCAGCGCTGATGATGAGGCCGAGTCCCAGCTGACGGAGGGCTGCTTCTGTCCCAACGGGACCACGCTATTCAACCCCAATATGGACGTCTGTGTTGCCTCCTGTGCCTGCACCGGCCCAGACGGCATTCCCAAGGAGGTAAAGCAGCTCTTTTCACTAATCGTGTGTCAGGGAATGGAGGGGAATGCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007003 True 1650 mRNA 0.58 10 473858 478272

Neighbor

gene id symbol gene type direction distance location
AMCG00007002 NA coding downstream 1547 464569 ~ 472311 (-)
AMCG00006996 NA coding downstream 93968 365990 ~ 379890 (-)
AMCG00006995 NA coding downstream 145147 317616 ~ 328711 (-)
AMCG00006987 ddb1 coding downstream 232398 226095 ~ 241460 (-)
AMCG00006988 NA coding downstream 275029 195304 ~ 198829 (-)
AMCG00007004 NA coding upstream 10383 488655 ~ 509749 (-)
AMCG00007009 NA coding upstream 75043 553315 ~ 554154 (-)
AMCG00007010 NA coding upstream 76802 555074 ~ 565774 (-)
AMCG00007008 NA coding upstream 88173 566445 ~ 568523 (-)
AMCG00007007 NA coding upstream 91863 570135 ~ 582565 (-)
G20465 NA non-coding downstream 49080 423334 ~ 424778 (-)
G20446 LOC103368535,LOC104922780 non-coding downstream 120387 346274 ~ 353471 (-)
G20423 NA non-coding downstream 156744 310713 ~ 317114 (-)
G20424 NA non-coding downstream 164032 308009 ~ 309826 (-)
G20412 NA non-coding downstream 166998 304589 ~ 306860 (-)
G20501 NA non-coding upstream 67784 546056 ~ 546501 (-)
G20507 NA non-coding upstream 110053 588325 ~ 588602 (-)
G20510 NA non-coding upstream 117205 595477 ~ 595770 (-)
G20604 NA non-coding upstream 340703 818975 ~ 823764 (-)
G20607 NA non-coding upstream 350825 829097 ~ 829524 (-)
AMCG00007001 NA other downstream 59732 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 111564 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 213622 259583 ~ 260236 (-)
G20388 ddb1,LOC107681355 other downstream 241364 230324 ~ 232494 (-)
G20609 NA other upstream 367657 845929 ~ 917829 (-)
G20630 NA other upstream 473964 952236 ~ 953062 (-)
AMCG00007059 NA other upstream 1664403 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 2166633 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 2997796 3476068 ~ 3500670 (-)

Expression


Co-expression Network