AMCG00007054


Basic Information

Item Value
gene id AMCG00007054
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1759494 ~ 1794639 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007054
GATCCAGGATATTTTGTGACAGATGTGTCTACGgtgctgaaaaaaaatattctaacaGAAATCCTGTCTTCTGGTTCAGGCTCCAAAGCTGCTGCCGAGTACAGCAATGGCATCTTTGACATGGGGTCTCCAGGCTACTTGGGAACCCTACAGGTTTTACAGCTTGCTGAAGACCTGAAAATGGCTCTGGAACTGCAGGGGAGTGAAGAGGAGAAAGAGTCTTTAAGAACCCAGATGCCAGCGCCAACAGCCCAATATCTGTTGCAATGGCTGGGGAAAGGCACAGTAAATCTCCGGTCTCCAGTGAACAATGAAAGCTATCAGGATCGTCTGACGCGATTAGAAGGCGATAAGGAGTCATTGGTTCTCCAGGTGAGCGTGCTCACAGACCAGGTGGAGGCTCAAGGAGAGAAGATACGAGACCTGGAGACTTCCTTAGATGACCACCATCAGAAACTGAACTCCACAGAGGAAATGCTGCAACAGGAGCTGCTGAGCAGAACGTCCCTAGAAACACAGAAACTGGATCTTATGGATGAAGTTTCatatctgaaactgaaactggtCGGAATGGAGAAGGGACAGATCGACTGTGAGGACAAGCAGCACAAAGCCGAGTATGTAGTAAATCTGATTAGTGAGCTACAGGAGCAGATGTGTAAATTTCAGCAGGAGATCAATACAAGAATCCAGGAGAAAAAGGCACTGGAAAGTAATGCTGACACTAAAGCTAAGGAGCCACACCAGAGCACAGACACAAGCTTAGGCAGCTCAAACACTGAGGACTGCTGTTGCTGTAGAGGAGAGAATGGCCTGCTGCAGGAACTCAGACTCCTGAAGAACAAAGTGGATGAATTGGAGGGGGAAAAATCACAGTACGAGAGAAAACTGAAGGCGACCAAGGCAGAAATATCCGATCTTCAGCACCTACTGGCAACAAAAGATGCAGAAATTGAATGTCTGCAAAGTCAGCTGTTGTCCAGAGCTCCGTTATCCAATGATATCACAGAAAGAGATCAGGAACTACAAAGGCTGAAAATAGGAATGGAGTCTTTGTTGACAGCCAATGAAGAAAAGGACCGTCGCATAGAGGAGCTGACGATTCTCTTAAATCAGTATAGAAAGATTAAGGATGTCATGGCAGTAGCACAAGGCGGTAGTGAGAGAAATCTGTCTGGCAGTAGTGAGGAGGAACTCAATGGAAACACCAAGATGAGGAACACAGTCCACAAAAGCAACTCGGAGAAGATTCAATCAGAGATGTCTTCCAGAGGTTCTTCACCACTTTTAGTTTCCCCTTCATCAATACAAAGGGAGACAGACACCAGGGCACAACAAAGGATGTTATCCAGTAGTTTGGAAGAATTACAGAGTGGGTCTTTACAAAAGAGTCCACAACTTATAGAAAGTTACAAATACCAGACTTTGCCAGGGAAACTATCAAGATCCCACCAAAATGGAGATAAAGAGAAATACAAGTCGCCTGATGTACAAACATCGATGGAGGAGGCTGAAGAAAGTGAATTCAACTTAAgaaagacagagaaaatggATGATACAACATCATCTGACCTTTCACCTCTGTCATCGGGCGTTGACTCGGGACAACAGTCTCCCGTCTCGCCGGAGAACAAAAAGAATTCCAAAGGCATCAAGAAATTCTGGGGAAAGATcagaagaacccagtctggtaCTCTGCAGGGAGATGACCTGGAGCCGTCTGAGTTCAGGAGAGGAGGCCTGCGGGCCACAGCAGGGCCCCGACTGGCTCGGACTAAAGAAACAGGAAGCACAATCTGTGACCTGAACACTCCCTTCTCTAAGTGGACAACAGAGCAGGTGTGTGGCTGGCTGGAGGACTTTGGTCTGGCTCAATACGTGAATCTCGCCAGGCACTGGGTCAGCTCTGGACAGACACTCCTAACTGCGTCTCCTCAGGAGCTTGAAAAGGAGATGGGAATAAAACATGCCCTGCATAGAAAGAAGTTACAGCTGGCTGTCAGATCTTTCAATACTAAACTGTCCGAGAAATCAGCCGACCTGGACCACATCTGGGTGACACGTTGGCTTGATGACATAGGGTTACCTCAGTACAAAGATCAGTTCAATGAAGCCAGAGTGGATGGCAGGATGCTTCAGTACTTAACAGTGAATGACCTGCTGTTTCTCAAAGTCACAAGTCAGCTCCATCACCTCAGCATTAAATGTGCCATCCATGTCCTGCATGTCAACAAGTTCAACCCCAACTGCCTGAGGCGGAGGCCTGGAGATGAGAATAAGACCTCCCCCTCTGAGGTGGTGCAGTGGTCAAACCATAGGGTGATGGAGTGGCTGCGCTCGGTGGATCTGGCCGAATACGCGCCGAACCTGCGTGGCAGCGGGGTGCACGGGGGCCTTATCATTCTGGAGCCGCGCTTTAATTCGGACAGCTTAGCGATGCTGCTCAACATTCCCCCCCAAAAGACGCTTCTGAGGAGGCACCTGACGACCAACTTCAACATGCTGATCGGCTCAGAGGCACAGCAAGAAAAACGGGACTTCATGGAGTCATCCAGTTACACACCTCTGACAACCACGGCAAAAGTCAGGCCAAAGAAACTGGGATTTTCACATTTTGGGCAGCTGAGGAAAAAGAAGCTAGATGATTCCACGGATTATATTTGCCCGATGGACACTGCCCCGCCTGTCACCAATGGAGCCCACAGGAGCTTTGGGGGATTCAGGGGACTGAGTCCAATCTTTGACAGGGATGTGGAGAGACTGGAGCAGGTGGGACAAAACAGCTGATGCAGCACGAATGGGATCCATCACAGCTTGCAAACAATAACCCTGTGCCATCATCTAACACTGAAACCTCTCGACCCATGGGCATGAATACTGTTCAGGACATACTAAAATGGAAATTCGCTGGAAGCAGTCTTGTCACTTTCTAATCATCCTGACAATTGTGGATGCAGTATTTTAGTACTGATGTTTAATACCATTTGTCTCATTAGTTTAATACAccattttcatgcattttttttattaatatgatataattatttgttgtgcattttaagactttataaatatttcttacagattacagtgttttgtaatacattttgcaaaggaCAAATTCCAGACTGGTCATTTTACTGTTTGCCAGacagttattttgaaatgcaaactgTGCAATATTTGCACATTGAGGggatatatttattgtaatggaattgtattatattacaaCATAACCACAAGACATCCTGCAACTTTGTCCAcgtttttagaaaaaatattttgttaattctcACAcgcttttattttgctataaatATAACCTATACATAATACCTGAACTATTTTTTTATAGCAAACTAAGGTATGCTGTTGTTATTCAGTAGGTATTTGGTTCCTATGTCATTGtaaatagcattttaaaaaataaattggattacaataataaatgaatcTCAACAGAGGTGAGtgcatattgttttttcctCAGTATTATGaaacaatatactgtatttttgtacactGCATGTTAAGCAGTTCTTTAAGAAATAAACCCCGTTCCAACTTGAAAATCTcttgaaaatctttttttaagcaTGCCTGAagttgaaatatttgttttttctaaaatgCAATCAGACATCATAACTGCAACAGATTCTGCAAGCCTGTCAATCAAAGTGTGTGGGGTTGTGAAAGTAACCCAGGACACAGCCTTGTTTTACAGCGCATGATTAACAAAGAATAATCATTCTCTAACCGGCTGTCAGTTAGTGCTTTTGTTGACCCTGAAATGTCAGTTTTGTGCAAGAAGAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007054 True 3823 mRNA 0.44 22 1759494 1794639

Neighbor

gene id symbol gene type direction distance location
AMCG00007051 NA coding downstream 3152 1755590 ~ 1756342 (-)
AMCG00007047 NA coding downstream 61661 1659504 ~ 1697833 (-)
AMCG00007046 NA coding downstream 106182 1637115 ~ 1653312 (-)
AMCG00007044 usp47 coding downstream 132835 1599935 ~ 1626659 (-)
AMCG00007045 NA coding downstream 189150 1532459 ~ 1570344 (-)
AMCG00007053 NA coding upstream 27312 1821951 ~ 1824537 (-)
AMCG00007052 syt9,LOC106573278,LOC106561481 coding upstream 50016 1844655 ~ 1862173 (-)
AMCG00007060 NA coding upstream 120663 1915302 ~ 1924883 (-)
AMCG00007058 NA coding upstream 410489 2205128 ~ 2218145 (-)
AMCG00007057 hipk3,LOC105899775 coding upstream 443528 2238167 ~ 2244432 (-)
G20795 NA non-coding downstream 29015 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 32327 1722556 ~ 1727167 (-)
G20726 NA non-coding downstream 378384 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 767495 990555 ~ 991999 (-)
G20614 NA non-coding downstream 822992 906596 ~ 936502 (-)
G20870 NA non-coding upstream 377265 2171904 ~ 2172483 (-)
G20908 NA non-coding upstream 405414 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 492185 2286824 ~ 2288618 (-)
G20947 NA non-coding upstream 632520 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 753365 2548004 ~ 2548289 (-)
G20630 NA other downstream 806432 952236 ~ 953062 (-)
G20609 NA other downstream 841665 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1345368 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1397200 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1499258 259583 ~ 260236 (-)
AMCG00007059 NA other upstream 348036 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 850266 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1681429 3476068 ~ 3500670 (-)
G21426 NA other upstream 3247020 5041659 ~ 5049520 (-)
G21429 NA other upstream 3262148 5056787 ~ 5057406 (-)

Expression


Co-expression Network