AMCG00007057 (hipk3,LOC105899775)


Basic Information

Item Value
gene id AMCG00007057
gene name hipk3,LOC105899775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2238167 ~ 2244432 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007057
ATGGCCTCACAAGTCTTGGTCTACCCACCACATGTTTATCAAACCCAGACAAGTGCCTTTTGTAGTGTGAAGAAACTCAAAGTAGAGCCAAGCAGTTGTGTTTACCATGCGAGAGCCTACCCACGGACGTATTTGAATGGTCGAAACCTCGGCATCGCTAAACCGACAAACATTGTTAATTCATTTCAGACGCAAGATTTGGTGCGTGGCAAACACCACGGGCAGAACTTTTTGTTGCAAGCTGTTACCTTAAAAGCTGCACGGGAGGAGCCCAGGCCACCAGCGGCGCAGGCGCAGCAGCGGCAGCCTCTGCAGCGTGGGGGGGCACCCTTGCAGGGCACAGGCAAAGGGGGCAACAGTGGAGGAGGTGGAGCAGGAGGAGACGACGACGACGGGGGAGGTTTAAACTTGGCGGATAGCTCCCAGAGATGTGGGCTGAAACGTAAGAGCGAGGAGCTAGAGAACAGAGGTAGCACCATGCAGATTGTGGAGGAACTGTCCATGTTGCCTGCGATGTTGCAAACGAATGTGGGAAACCCGGTGGCCGTGGTGGGCGCCTCGAAGCAGAATGGCGTCGGCGGGGATGGGGACTACCAGCTGGTGCAGCACGAGGTGTTGTGCTCTATGAAGAATACGTATGAGGTCCTGGACTTTCTGGGGAGGGGGACCTTCGGTCAGGTAGTCAAGTGCTGGAAAAGGGGGACGAATGAAATAGTGGCCATTAAAATACTCAAAAACCACCCCTCGTATGCACGGCAAGGGCAGATTGAGGTGAGTATTCTCGCCCGGCTGAGCAGCGAGAACGCGGAGGAGAATAACTTGGTACGGGCTTtcgaatgctttcagcaccgcAATCACACCTGCCTGGTGTTTGAGATGCTGGAGCAGAACCTGTATGACTTCTTGAAGCAGAACAAGTTCAGCCCCCTGCCCCTGAAGGTAATCCGGCCCATCCTGCAACAGGTGGCCACTGCACTGAAAAAACTGAAGAGCCTTGGCCTCATTCACGCGGACCTCAAACCGGAGAATATCATGCTGGTGGACCCTGTGCGGCAGCCGTACCGGGTGAAAGTAATAGACTTTGGATCTGCCAGCCATGTTTCGAAAGCAGTGTGTTCTACGTATTTACAGTCGCGGTACTACAGAGGGGAATATGTGCAGTATGATGTAGTGGAAAGCTCTTATCAGTTCCAGTCTTTTGAGATCTCCCTCATTGGGAATTGA

Function

symbol description
hipk3 Enables protein serine/threonine kinase activity. Involved in mRNA transcription; negative regulation of apoptotic process; and protein phosphorylation. Located in cytosol; nuclear body; and plasma membrane.

NR:

description
PREDICTED: homeodomain-interacting protein kinase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007057 True 1224 mRNA 0.53 2 2238167 2244432

Neighbor

gene id symbol gene type direction distance location
AMCG00007058 NA coding downstream 20022 2205128 ~ 2218145 (-)
AMCG00007060 NA coding downstream 313284 1915302 ~ 1924883 (-)
AMCG00007052 syt9,LOC106573278,LOC106561481 coding downstream 375994 1844655 ~ 1862173 (-)
AMCG00007053 NA coding downstream 413630 1821951 ~ 1824537 (-)
AMCG00007054 NA coding downstream 443528 1759494 ~ 1794639 (-)
AMCG00007062 NA coding upstream 45971 2290403 ~ 2297881 (-)
AMCG00007063 NA coding upstream 57951 2302383 ~ 2310199 (-)
AMCG00007065 NA coding upstream 82180 2326612 ~ 2346701 (-)
AMCG00007066 NA coding upstream 105606 2350038 ~ 2363800 (-)
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding upstream 131704 2376136 ~ 2382023 (-)
G20870 NA non-coding downstream 65684 2171904 ~ 2172483 (-)
G20795 NA non-coding downstream 507688 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 511000 1722556 ~ 1727167 (-)
G20726 NA non-coding downstream 857057 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 1246168 990555 ~ 991999 (-)
G20914 NA non-coding upstream 42392 2286824 ~ 2288618 (-)
G20947 NA non-coding upstream 182727 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 303572 2548004 ~ 2548289 (-)
G20976 NA non-coding upstream 384665 2629097 ~ 2637796 (-)
G21020 NA non-coding upstream 658130 2902562 ~ 2903620 (-)
AMCG00007059 NA other downstream 41312 2142675 ~ 2196855 (-)
G20630 NA other downstream 1285105 952236 ~ 953062 (-)
G20609 NA other downstream 1320338 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1824041 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1875873 356618 ~ 362294 (-)
AMCG00007072 NA other upstream 400473 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1231636 3476068 ~ 3500670 (-)
G21426 NA other upstream 2797227 5041659 ~ 5049520 (-)
G21429 NA other upstream 2812355 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3572377 5816809 ~ 5820284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003151 si:ch211-160o17.4 coding NC_007122.7 CM002895.2 2649664 ~ 2684595 (+)