AMCG00007070 (rcn1,LOC102786392)


Basic Information

Item Value
gene id AMCG00007070
gene name rcn1,LOC102786392
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2462154 ~ 2475341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007070
ATGAAGAGCTCTTATAAGCTGTGGCTGAACCTCGGGGACATGGAGATAGCCATGGATCTGGACGGGTTCATGTGCTTGGTGCTGCTGTGTGCAGGAGTGGCCTTCAGCAAACCCACTTACAAGAGAGACCGGGTGCACCCCGACCCCGAGCTGAGTAGACAACCCCATGAAGACAACCAGAGCTACCAGTATGACCATGAGGCCTTTTTAGGGAAAGAAGAGGCCACGACTTTTGATCAGTTAACCCCCGAAGAGAGCAAGGAAAGGCTTGGGAAAATTGTTGACCGGATAGACGGTGACCAGGATGGATTTGTGACTACTAGTGAACTGAAGAACTGGATCAAACGAGTTCAGAAACGctacatttatgaaaatgtagCTAAAGTTTGGTCAGACTATGACTTGAACAGGGACAACAAGATTTCCTGGGATGAATACAAACAAGCTACCTATGGCTATTATCTTGCCAACCCGGATGAGTTCGAAGATGCAAATGACCAGTTCAGCTTTAAAAAGATGCTACCCCGCGATGAAAGAAGGTTCAAAGCTGCCGACCTCGATGGTGACCTGGCAGCCAGCCGTGAAGAATTCACAGCTTTCCTCCACCCAGAGGAGTTTGAGCATATGAAAGATATTGTCGTCCTTGAAACACTGGAAGACATCGACAAGAACGGCGACGGCCACGTAGACCAGGACGAGTATATCGCTGATATGTTTGCTCATGAAGAAGGAGGCCCGGAGCCCGATTGGGTGAAAACGGAGCGAGAGCAGTTCTCCGACTTTCGGGACTTGAACAAGGATGGGAAGATGGATATGGATGAAATCCGGCACTGGATTCTCCCTCAGGATTACGATCACGCTCAAGCAGAAGCAAGACACCTGGTCTACGAATCCGACAGGGATAAGGATCAAATGCTGACCAAAGAAGAAATCCTAGAGAATTGGAACATGTTTGTGGGAAGTCAGGCCACAAATTATGGGGAGGACCTCACGAAAAACCATGACGAGCTGTGATCTTGACAACTGTCCCGTCATGCAGTCCTTTCACTGCCACACAAACTCAACTCTGCTAAAGATAGGAATGAAGCCACTGGTGCTCATGAACAATTGTTTCTGGAGAGTGACTGATACCTCTGGTCCAATACCAGGAGCTGAATACAGTTGATTACCTCATTTTCAGGGGGAATGTGGCCCTGTTGCCTGTTTGCACCAATAATAGGGTTATGCCAACCTTATGTATTTGAATGAGAAGTGTTGTTCTATATGGCAAAGGTGGATTTGTTTCGGGTTTAGTTTACGCAAGGTTGGTTTTCATAAGCTGAGCTGCCTCCTACTTTGTGCCTCCTTTAAGCCATTAACAGTTTGAGGGCGTTATCAAACCAGTTCTCATTGTGAAATGCTTGAAGAAACTCCATAGATTTTGTGTTTCGTCCAATCAGTTGTTACTATTCGTATTATATGTTAAACAGGATTCTACCATCTAGTTTGAAGGCACTTCAGTACCTTCAAAGTGCTAAACAAAAAGCTAATGGACATCAGTTACACTGAACTGTACGCTGTGGTTTTATATGTGATGCCTCAACATCACATTCTTGAATCCTACACTCGTTTTCCTTCAACATGAAACCCCAATCATAATTAAAATTTTACTAAAATGTGGATATTTTCATCTTCGTTGAAAACCTAATGAACAAATGTAaaggattgttttattttcttttatcatCACCATACTGTGATATTGACTGTTACACCAGCAGTTGTCTTGGTgcattgaattgatgatcagtGGATATTGTGGAACACTTTGCAGATATTTTCAGAAGCAACTGTCTAAAGCATGAGTGACAATGTTACACTAATATTTGATATTTCTGAACTTCAGTTTTAAGCATTCGAAGAGATTACCAATGTTGTGATTGcatgtacagttttgtttgaaCAAATTAGCGGTctagtatatacatttttacaacttagaatgttttgctttgtattgtattacaggGTTGCATGTGTCAAGTACAACATCTCTATTTTACATCAGTcatcactttttattattttctaattgatTAAGTGTTAGTGGTTTTAAGATTGTTTCTGCATGTAAGCCTGCCATGGCCATGTTCTGACTTGAAATGCACGAGGGGGACTTGTTTCTCTGATTCTGATGGCCTCGTCGTGCCTCCGTGTTTAGATGAAATTCTTGAGCGAGTCCAGATAACGTGGGTTTCTTTTGGTTCTAAAATTCAACAGGTTCAGACTTTCTGTATGTAGCATTTACACACAATTGCCACTTTGATCTGTTACGGTTTGACCATATGCTGTTACATTGTTACATACAGTACTTGCACTTAAGTATTTGGACAGTTTAATAATGTGTATTCATTTCAGCATAAGCACACCCAACAGCTTTTTAAGTAGTTTCAgaaaccatttcattttttaaaattgtaataataaaacaactaaatcttaaAACAGTTCttaaatcatgtttatttttttacacattttttaacttGAACACCGTGAGagagattttaaaacaagacaggTTGTCCATAACCACCTCAGCTGAAACTAGATTATTGGTAATATACTGATGCATGTTCTACCCTTGTAGCCACACTGTTTATAGTTAGCAGTTCATAATTGAGCTATACATTATACCTAAGAGTTAAGATACTCTGGGCACATGGGAACATATCTTCTCTAAGCATTTTCTAAATTCATGTGGAAGTTCCTTCGGCTTTTCGGACTCCGTGTCCACAAAGACGTGTGTCGAGGAGCCTGTAGTACAGGCGCTGTCCTCATATCCTTTCAGTGGGGGGTTGTGGGAAAAACAGCCATTACTCAGGATGCTGGGATCCAGTGAAATGGGCTGCAGCGATGGAAGAGGTTTAAACAAAGCCAGTCTATAGTGGACGCTGGAGCGGCCGATCTTGTCCACCGCCAATGCTGCCAGTGGAATTTCGGGGAACTTCACAGGTTTATGAAATGAACACTGATTGGAGACTATAAATCCAACCATGGAGGAGGAAAGCCTGTTTGTGTTTAGAGCACAGTACCTacaggataa

Function

symbol description
rcn1 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axial mesoderm; chordo neural hinge; epidermis; head; and pectoral fin. Orthologous to human RCN1 (reticulocalbin 1).

NR:

description
PREDICTED: reticulocalbin-1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23898 RCN1; reticulocalbin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007070 True 3085 mRNA 0.42 7 2462154 2475341

Neighbor

gene id symbol gene type direction distance location
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding downstream 80131 2376136 ~ 2382023 (-)
AMCG00007066 NA coding downstream 98354 2350038 ~ 2363800 (-)
AMCG00007065 NA coding downstream 115453 2326612 ~ 2346701 (-)
AMCG00007063 NA coding downstream 151955 2302383 ~ 2310199 (-)
AMCG00007062 NA coding downstream 164273 2290403 ~ 2297881 (-)
AMCG00007071 NA coding upstream 121737 2597078 ~ 2629005 (-)
AMCG00007078 NA coding upstream 407027 2882368 ~ 2888415 (-)
AMCG00007081 csrp3,LOC107662347 coding upstream 429452 2904793 ~ 2908208 (-)
AMCG00007080 NA coding upstream 437088 2912429 ~ 2917189 (-)
AMCG00007085 LOC105018079 coding upstream 653438 3128779 ~ 3131839 (-)
G20947 NA non-coding downstream 34733 2427159 ~ 2427421 (-)
G20908 NA non-coding downstream 154036 2200053 ~ 2308118 (-)
G20914 NA non-coding downstream 173536 2286824 ~ 2288618 (-)
G20870 NA non-coding downstream 289671 2171904 ~ 2172483 (-)
G20795 NA non-coding downstream 731675 1676304 ~ 1730479 (-)
G20965 NA non-coding upstream 72663 2548004 ~ 2548289 (-)
G20976 NA non-coding upstream 153756 2629097 ~ 2637796 (-)
G21020 NA non-coding upstream 427221 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 447319 2922660 ~ 2923027 (-)
G21036 NA non-coding upstream 531057 3006398 ~ 3010255 (-)
AMCG00007059 NA other downstream 265299 2142675 ~ 2196855 (-)
G20630 NA other downstream 1509092 952236 ~ 953062 (-)
G20609 NA other downstream 1544325 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 2048028 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 2099860 356618 ~ 362294 (-)
AMCG00007072 NA other upstream 169564 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1000727 3476068 ~ 3500670 (-)
G21426 NA other upstream 2566318 5041659 ~ 5049520 (-)
G21429 NA other upstream 2581446 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3341468 5816809 ~ 5820284 (-)

Expression


Co-expression Network