AMCG00007072


Basic Information

Item Value
gene id AMCG00007072
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2644905 ~ 2663649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007072
CGGGGAAGTTAAAAAGCGGTGCAGACATGTTCATGCGTTCAGGCTGGAGCGGCTTGTGGAAACGGATGGATGACTTCCTGCGCTTTACAGACTGAACCTGCCAAATCAAGGGTTATACAAACTAAACACTCAGAAGATGGTAAAAGTGAATTGTGAATCCTGCACAATATGATGGATGAAAATATCTGTCAAAAAGACTGGTATGCCATTCTTGATGCCAATCCCTCAGAAAACTTTCAAGAACTGAAACAGAAGTACCAGAAACTGGCACTTTTGTATCACCCAGACAAACAGAGTCCAGATGTGCCACCAGGAGAAGTGGAGCAACGTGTACAGAGGTTCATTGAAGTCGACCAGGCATGGAAGATCCTGGGCAACGAGGAGACAAAGCGAGAGTACGACCTGCAGCGGCGCGCCACTGAACTGCAGCAGAGATGGCCAGTTGATGCTCAAGTTTTTCTTGAAGATATGAACTGGGTGGATGGTGAGCAGGCCTATATGTATGAATGCCGCTGTGGAGGAGAATATATACTTTCTAAAGAAGATGCAGAAGAACATGTGTCCATTATCTGCTGTGATACCTGTTCCCTTAGTATAGAAGTCAATAAATGTAGCTTCTAagttcatgtaaaatgttttcaatcacTGTAAGATTGAATgctttaataaaagcaaaacatttatttttaattgtgatgtGATTATCTTGTAAACAATATTACAGTtgaggcagagattag
>TU26204
GACAACATGCTTCTGCTTCAAactaaaccattttaaattaatttctttcatgtttcatgtacatcctttttttctgtctaTAGAtaactgcaatgaaaatgtgcaGTGCGTTTACTGAAAGCGGTGTAATATTCGTCTTATTTTGATATGCATTTAgaatagaaaatgtgtaaatggaaGTGGAAACCATGTTATTCTctaattcaaataaacagttattGGTGTGTAatgatatttatatagtttGGAATGTAGCTTTGGCTAACATGACAGTTTCCCGGGGAAGTTAAAAAGCGGTGCAGACATGTTCATGCGTTCAGGCTGGAGCGGCTTGTGGAAACGGATGGATGACTTCCTGCGCTTTACAGACTGAACCTGCCAAATCAAGGGTTATACAAACTAAACACTCAGAAGATGGTAAAAGTGAATTGTGAATCCTGCACAATATGATGGATGAAAATATCTGTCAAAAAGACTGGTATGCCATTCTTGATGCCAATCCCTCAGAAAACTTTCAAGAACTGAAACAGAAGTACCAGAAACTGGCACTTTTGCCACTGAACTGCAGCAGAGATGGCCAGTTGATGCTCAAGTTTTTCTTGAAGATATGAACTGGGTGGATGGTGAGCAGGCCTATATGTATGAATGCCGCTGTGGAGGAGAATATATACTTTCTAAAGAAGATGCAGAAGAACATGTGTCCATTATCTGCTGTGATACCTGTTCCCTTAGTATAGAAGTCAATAAATGTAGCTTCTAagttcatgtaaaatgttttcaatcacTGTAAGATTGAATgctttaataaaagcaaaacatttatttttaattgtgatgtGATTATCTTGTAAACAATATTACAGTtgaggcagagattagaaaacACAcccagttaaaacaaaaatgtatttaataaaaattaataagCG

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007072 False 740 mRNA 0.42 5 2644955 2663371
TU26204 True 929 lncRNA 0.36 4 2644905 2663649

Neighbor

gene id symbol gene type direction distance location
AMCG00007071 NA coding downstream 15900 2597078 ~ 2629005 (-)
AMCG00007070 rcn1,LOC102786392 coding downstream 169564 2462154 ~ 2475341 (-)
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding downstream 262882 2376136 ~ 2382023 (-)
AMCG00007066 NA coding downstream 281105 2350038 ~ 2363800 (-)
AMCG00007065 NA coding downstream 298204 2326612 ~ 2346701 (-)
AMCG00007078 NA coding upstream 218719 2882368 ~ 2888415 (-)
AMCG00007081 csrp3,LOC107662347 coding upstream 241144 2904793 ~ 2908208 (-)
AMCG00007080 NA coding upstream 248780 2912429 ~ 2917189 (-)
AMCG00007085 LOC105018079 coding upstream 465130 3128779 ~ 3131839 (-)
AMCG00007094 lrp4,LOC106587054 coding upstream 840200 3503849 ~ 3538983 (-)
G20976 NA non-coding downstream 7109 2629097 ~ 2637796 (-)
G20965 NA non-coding downstream 96616 2548004 ~ 2548289 (-)
G20947 NA non-coding downstream 217484 2427159 ~ 2427421 (-)
G20908 NA non-coding downstream 336787 2200053 ~ 2308118 (-)
G20914 NA non-coding downstream 356287 2286824 ~ 2288618 (-)
G21020 NA non-coding upstream 238913 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 259011 2922660 ~ 2923027 (-)
G21036 NA non-coding upstream 342749 3006398 ~ 3010255 (-)
G21082 NA non-coding upstream 744505 3408154 ~ 3408708 (-)
G21122 NA non-coding upstream 838234 3501883 ~ 3502845 (-)
AMCG00007059 NA other downstream 448050 2142675 ~ 2196855 (-)
G20630 NA other downstream 1691843 952236 ~ 953062 (-)
G20609 NA other downstream 1727076 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 2230779 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 2282611 356618 ~ 362294 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 812419 3476068 ~ 3500670 (-)
G21426 NA other upstream 2378010 5041659 ~ 5049520 (-)
G21429 NA other upstream 2393138 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3153160 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 3343991 6007640 ~ 6054064 (-)

Expression


Co-expression Network