AMCG00007145 (LOC107722349)


Basic Information

Item Value
gene id AMCG00007145
gene name LOC107722349
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5438262 ~ 5447370 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007145
GtgacggacagagagagagagagagagagagagagatgggaggaggagcaggagggagaCGCACAGACCCGGCTGGTCCCGGAGCCGCTCAGTCCAGACCCAGGACTGGCTGGTAATTACAGGGGGTGACGTCACGTCTCTTGTAGCACCGAACTGCAACATTGAGCTCCTGGGTGCCGGGATGCCGCTGTGACTGCAGTATGAGAGATCAGCCCTGACCCTCAGACAGgTATCGATCCTTTGCCCACCATGAGCGACAGTGGACAGGCCAGGAGACTGAGCCGGGCCAAGCTGGTGGTCCTGGGCCGAGACAACTGTGGCAAAACTGCGCTGTGCGTCAGATTCGTCACCAAGCGCTTTATTGGGGAGTACGATCACAAAAAAGAAGTAACTTACAGGTGCAGAAAAGTCGTGGACAAAGAAGCAGTCGATCTGGAGATACTAGACACAGCCAACAAGAAGTGTGTCGGAGTAGCCGCCAACTCTCTGGAGACGTCCATCAAATGGGGCGATGGCTTCCTGATCATGTACTCTGTCACCGACCGAGGCAGCTTCGAGGCCGTGTCCCGACTCAAGAGGCTGATCGACCATGTCAAACAGACTCTGGGTGAGTGTCACTTCTATGAGCTGTCGGTGGCCGAGAGCTCCCCGGCGGTGGAGACGGCGCTGGGGCAGCTGGTGCGTGAAGTCAGGCTGGAGTTCCACAAGCACCTCCTGGCCATGGACAAGCGCTCCCGGGTCCTGCAGATGAGGCACGCACTGAAGAACAAGCTCACGCGCAGCAAGACCATGCAGTGGTGACCCCCTCCCCGGCCAGGAGGGCGGCGACACAGAGGGTGGGAATCCAGCGTGGGGGGCCAGCCGCTTTTAAACCAGTCTCCCCCATCTTATCATGCTGAAAACAGGGACGTCAACCAGTGCGACTCACTACGAACTTCCAAACATTCCTGTAATGAACTCTGAAACTCAAAGGTGCGTCCGGCTCACACCCAACAATCCTCCAACACTCATGGCATCTGTGATCGATATCCTTGATTCGGAGTCTTAGGACCAGTAGGACACAAGGACATGTTGGCGTTTCTTTGGATGTTTAGCCTTAtaattgacatttttttaaacggGACCGAATGGGTAGTCTCAATTTCATTTTCTATACTAGAGTTAGGACACATCTGGAAAAATCTCTTCAGACAGAAAGGACGACTCTGGCTTGTGGTTTCAGACCAAGACGTGTCCTGCTCTGCACCAGCTGGACGATGTGTGAATTAAAGATCTGATAACGGGTTTAGACCCTTAGATGAATAAACAGAACAATTCATTCACAGCTTGGCTTACAGAAAGGAATAGCCATTTGCAGTTCAGAaagctttttaataaataaaaggaaatatagATGTTAGTAATGTATGTGAAATGATCTCTAAGGTGTAGCGACTttgcagacagaaaataaataacttgtttcCACAGTCTGGTTCAGCTGCCGTGAGAAGCGTGTAGTGAAGGATGATTCATGATCTGTCTAGTGCtcttaaaacatacacacaaaattaaTTCATTGAATAAATCACAAGACGCTGCAGGAGAGGAAACtcaaaacagaagagaaagaggTGCATTGAGGTGAAATTCCCCCCATAAAGACCTTGTTCTGTAGTCAGGCAAGGAAAGGTAGAATtcagacatttcatttttgttattttatttagcaaaatggtaaaataaataaatacaaattgatcaaACGCTCCTAGAATCCACTTCTTTCAATGTTCTCTAAAGTATTTGCTAAACACTGCATACAAATAACTTAATATCACATGAGGCTCAaatacaggagagagagaggtaaggAAACTCTGCAGTTCACTAACAATgtcaggcaaaaaaaaaaataggatctGTAACAAAagagaaattgaaaattaaaaaaaaaaaaaaatacactccgttctttaaaatcaatatgaaaaaatcatacaattaaaaacaattctcaGCAAGAAAATATGCAGTCTGTGTAATAAACAATTTACACATATTTCAGCACAGCGAGTACGTACTCCTGCTTCGTTAAGTTCAACTAAAATGCATCTTTGTTTCGTGTTTAACAAAgtggaagatgtttttttttttttttgcacgcTTTTACTGAAAGTCTTCCAATTGAAATTACTGTGCATGAGGTAAAAAGTGGTAAGGTGTAAGAAAACAGGGAGGTCACAATCTAGTGTGATAATCAGACATAATTACAATACTCGAAGGCCACAGTCGTACTGATATAtcatgaagaaaagaaaactgtaaaactgtaacCGGAATATACTAAGATATACCACTGATTGAATCTCGTGTATAATGCACTAGTGACAATGTGAGCATGGCTCTGCGGAGACGCACTGTGGAAAGCACCAGTAAATACGTCTTAGTACTTTATTTCCACCTGGTACATTTGAACTGCtttctttcccttctctgtAATCGTTTTTCCACCTGCACTGGCTGATCGTTAACGTATTTGGCCAtgaatggaaaaagaaacaaacacacaagaaggCTACCACAAGCATAGTTCTGTACGTTTTCCTGGGAAAACCTCGGAAGTACTTTGGTCGGTAGGAATCTCAGTCGGGTGACGGTTGCTGTATTTTGAAGCCTGTCGGCGACGGAGGCCAGACGGAAACATCTTGTGGTGTTGATGGTGAAGCGGTGAATGTCATGGCTAGGCTGAAGTGTTTATTGATAGTGTCtctcttaaaaataattgaaccaGTGTGTAttacaaatgcatataaaaaggCTCTGAAGCCGCAGAATGCACATTGAGTCTTTGGGTATATCGGTTTTTAAACACGAGTGCTTAAAAAAGGTACACTGCATGAATTTCATGTCTTGCGAATAACAAGTGGCGCTCAAAACGTGTGATTTAGCCCCTTTTACtgccccaccccctccccagtACCCCCCCAACAAAAGCAGAGACATTCAACATTTTGCTTCAGAAAAGGCAGGATTGAATTTGAGTAATTATACCTGAAGAATGAGctggaaataaaaaagctaTCACAACTCTTCCTTGAgcttgcttttttctttcttttttttgcaaatggaaaatcaatGCAGTTCATGGCATTTCAACATCTCGTCGTCTAATAACAAACATCGTTTCTCTTCTACGTATTTCCAGCATTAAAGGTTCTGAAAGTGCCAGTAAAAAGTCTTAAAATGGGTTCGTTTCACAATGTACAATTATGAATGTTGTTTGAGTTTTGGCAGCAGACAGTTTtgcctgattaaaaaaaaaaaaaaaagaatgaactgcaattaaattgtttgtgtagataaaaaaaaacaactaaacttTCAGGAAACAGGTTTGAAACgcaaatgcatattaaaaagtatttaaaaaaattgcataaCACCTATTTTGTTAATCCCATCTTCTGCGACTAGGGTTTCGAATTGGGCTGCGATATTATGTAATACTTCCACATGACATGCCGATATTGTTACAGAATTcatttgccttttctttttccttcaaTGGGActggttttccttttcttaattgGAAGCAAAAcaacctaaacaaaacaaactcaaagGGATGTCACCCAGGACAGTGAATCTCTGAGCGCAGGTGTAACATGAGTGGAAACCGGACAAAGACCCTCATTGTCACTGGCATCATACTGTGCTCTGCTCCGGATGATCAAAttctttcaaataaagaaaGCTGCATAAATCGGGGAAACtaggataaaaaaaaaggatgtaaaatgttttctctctttacagatttcattaaaaataagatttttgCAGACAACCAAAATAATACTAGGATGGCGTcttaacacagaaaacaaaagtgcatcGGAATATCTGCAAAGGTTGCGTACTTCTTACGCGCGTTGTTACGTATGCCTCAGTTGCATTCGGAAGATATTGTGTATGGCCCACGAAAGCGTCTTTAGACAGATCTGTGGTCCACAACTTCTTGGGATACAGAAGGCCTTTACCTTTAAACTCAAATAACTACAGACGGCACACTCCTACAAACAATCCCATACaaacagttctctctctctatctaatTGTTAGAAAATGGCAATGGTAGGTTTCAATGTCTTTCATGAAACTGAATTCATTCCAACTTTGTGCAACAGTATAGTTTACGATCAATCTCTTATTGTTTACGATCACCCAAATCTCAAAAACACGTGGTTCCTCGGGATTTTGCTGCTCCTCACACAGACTTGAGAGCTCACAACACCTGGAACGCACAACTTTTTGTTCAGGACAAGGATACAATTTCTTAAGGCAACTGCTAAACAATTacttctttaattattttacaaagccAGGAGCTTGATACACGGGCAGCCACTCGTGTCTGATAGCGGGGGTTACTTTCACATGTCTGACACACAACAGCTACACAACTTCACACAGCATCAGCGTTTGTCCGAGACTCGTGTCTGTATTTTAGTTCTTTGTATCCGATCATTCAAATTgtgctttgcttgttttcttgtattgtaAATCATAGTTTTGTGGTGTTTTGCACATAAAGGCTGGGGGGGGGATTAAGTGAGAAGCACAGATCAGGTTAGAAGTTGGGGAGCTGAATTGTTTAAATCGACTGCAGGTACGTCACAGCATCAGAAGTACACTTGGACActcttacaaaaataataatcatactggTGAAAAGGCACTCGACACGTACCTTAAGAGAATGCGTTTATCTGTAATAAAGGCCAGATCTGATGAAAACCATGGGAATAAGTCCCGTCCTACAATAAGGGGACTGCGGCCACGAAGCTCGAGACGTGCTCTGCGAACTCATCCTCAGCGTTCGAACCTCCGACCCGGAATGTCGTGATCGAGCACGAGGTGACGGGGAACTGAGGTAGTGCTGCTCTCTCGGTGTAAACGGCAAGGCCTGAATCTGaagaggttttgttttcagaacacCAACGCGTGGAATCAATAAAAGCACGTTTTCTACGTAAAGAAAAGTTTCAGAATTGACAGTCTTCAGTACAGTGTACGCTGGGGGTAAACGGCACCGAAAAACTAAAAGCAACTCCTGAAAAAAGCCTGTGAGGAGTTCGATGAGCCCTTCATATTGTTCGCCTAGAGATTTCCTTTTTATATCCGGGCGCCATTAAAGAACATAAAATTATTGTGAAACCCAGACTTCAATCCACTCTTAACGACTGACTCGAGTGACTTGACATCAgagggttgtgtgtgtttttgctcaGCATTTGGAGAGATTCCCTCaacacttttttgtgtttctttttagaAAAGAATACAGATCCAGTAATACTACCCCAATCCCCACCTTCCCCTCAGTGAGCGCACGGCTGCCATGCAGAGCCGTGTATAAAACTCAAAATGAGAAGCAGGCCGGCCCTCCGTCGCCTCCATCTCCCGGTGCCGAGCTGGCAGCGCCGACAGGCAGGGAGATGGCGGCGGCGGCACAAACTCAGACGTGGCCACgttctttcattgtttttggttCGTAATTCAGAACTTTTGGGAAACCGGAAATTGTCAGAAAACGTactgcaagtaaaaaaaaacacatatatatatatatatatatatacacatactttcactgtaaaaggaaaacaatgattTTCAGTCTGTATTAAAGTGTAGAGGTGTACAGCATCACACTGTACACACCACAGACCCGGAGACCGCTCTCGGCTTGTTTATAGCAGAATTGAATTGACCTCTTTGTGAAGCACTTCCTCTATGAAGGCCATAAAAGGTACTTCTGCTTGTAAGTTGGCtgtgaaacaaaaactaatttctGTAGATATTTCCAGTTTAAATTAAGTCTCCCTAGTTCAGTAGCAGATGGAGACTCCTACTGGCCAAGGCAATGCAGTGTTTCTACACGTCCCAGGCGGGCCAGGCCACCACATACCAAGCTTCCACAAACAGAATCCAAAGCTTCTCGGCCTACGAGACCATCAGAGAAAAGAGACGCGCGAGGGGGACACAGATATGCATGGGTTTCAGATATGAACAGGATATGTAAAGTCTCACGAATGCAGAATCTGGACTAACTGGACTCAAGAGTTCTACAgctaaaggaaattaaatat

Function

NR:

description
PREDICTED: ras-related and estrogen-regulated growth inhibitor-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007145 True 6140 mRNA 0.43 6 5438262 5447370

Neighbor

gene id symbol gene type direction distance location
AMCG00007139 creb3l1 coding downstream 119023 5308415 ~ 5319239 (-)
AMCG00007140 NA coding downstream 134131 5302051 ~ 5304131 (-)
AMCG00007138 dgkz,LOC106561949,LOC106587110 coding downstream 229226 5166895 ~ 5209036 (-)
AMCG00007136 dgkz,LOC106561949 coding downstream 286280 5149203 ~ 5151982 (-)
AMCG00007137 NA coding downstream 316897 5113262 ~ 5121365 (-)
AMCG00007149 NA coding upstream 23734 5471104 ~ 5485827 (-)
AMCG00007153 f2,LOC107554629 coding upstream 41825 5489195 ~ 5493804 (-)
AMCG00007151 NA coding upstream 49578 5496948 ~ 5501797 (-)
AMCG00007152 NA coding upstream 79612 5526982 ~ 5552311 (-)
AMCG00007150 NA coding upstream 133414 5580784 ~ 5588229 (-)
G21462 NA non-coding downstream 305720 5132328 ~ 5132542 (-)
G21423 NA non-coding downstream 410536 5027202 ~ 5027726 (-)
G21419 NA non-coding downstream 474702 4963357 ~ 4963560 (-)
G21418 NA non-coding downstream 478509 4959516 ~ 4959753 (-)
G21414 NA non-coding downstream 492542 4942071 ~ 4945720 (-)
G21522 NA non-coding upstream 47979 5495349 ~ 5495735 (-)
G21535 NA non-coding upstream 67616 5514986 ~ 5515971 (-)
G21537 prdm11,LOC106560765 non-coding upstream 69857 5517227 ~ 5518751 (-)
G21536 NA non-coding upstream 74245 5521615 ~ 5523677 (-)
G21550 NA non-coding upstream 112224 5559594 ~ 5562208 (-)
G21429 NA other downstream 380856 5056787 ~ 5057406 (-)
G21426 NA other downstream 388742 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 1937592 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2774613 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3241407 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 369439 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 560270 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1877054 7324424 ~ 7342341 (-)
G21942 NA other upstream 2052077 7499447 ~ 7506875 (-)
G22200 NA other upstream 2945826 8393196 ~ 8396224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118966065 NA misc NC_048565.1 CM023219.2 88757265 ~ 88782119 (-)
tiger barb (Puntius tetrazona) G166340 NA non-coding NC_056723.1 CM032092.1 4362700 ~ 4423608 (-)