AMCG00007149


Basic Information

Item Value
gene id AMCG00007149
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5471104 ~ 5485827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007149
CGGCAGGGAGGCGCCGAGACACAGGTACAGAGCACGGGTCCCTCAGCGCCACGGCCCGGCAGCGGCTGCGCTGGCATTGTCGCTTAGTTGCAGAGGAAGCCTCAGCCATGGCCTCCGACCCCATCACAGACCTGCAGGACGACCTGGGAGAGGAGCCCGCCAATGCCTTGGACCAGCTCAAACTCTCCCCCCTGGAGGACAAGAACTGGCCCTCTGACGACGTGCAGGAGATGAGCAAGTCCGAAACGGACGACTCCAAAAGGTTGGACACGTCTCTCCACTTGAAGTGGGACGATCCCTTTTATGACATCGCCAGGCATCAGATCGTGGAGGTGGCAGGTGATGACCACTACGGCAGGAAGGTGATCGTGTTCAGTGCCTGCCGAATGCCCGATCATCATGTGCTCGACCATCACAAGCTGTTGGGGTACTTGAAGCACACACTGGACAAGTATGTTGAAAGCGATTACACCCTCATATACTTCCACCACGGACTCACCAGTGACAACAAACCGTCCCTCACATGGCTCAGAGATGCGTACCGGGAGTTCGACAGGAAgTACAAGAAGAACATCAAGGCTCTGTACATTGTGCATCCCACCATGTTCGTCAAAACGCTGCTCATTCTGTTCAAGCCATTGATCAGCtggaagtttggaaggaaaataTTCTACATGAACTATCTGAGCGAGCTGGAGGAGTATGTGAAGTGTGAACAGCTGATCATACCCACGCGTGTCAAAGAATATGATGCAAAGATCAAGGCGGCACTGAAACCCTCGGCCCAGGGACAGAAACCCGCCCCGCCAAGACCCCCCCTGCCGAACCAGCAGTTTGGGCTCTCCCTCGTGCAGTTAAAGGAGAAGAGTCCGGACAAAGACAAAATCCCCCTTGTGATGCGAGAGACGATCGGCTACCTAAAGGAGCACGGTCTGAAGACGGAAGGGATTTTCCGAAGGTCCGCCAATGTGTCCCTGGTCAAGGAAGTCCAGAACAAGTACAATACAGGAGTGCCAGTAAATTTCCAAGAGCAGGATGACGTCCACCTCGTGGCCGTCATCCTCAAGACGTTCCTCCGGGAGTTACCCGAGCCCCTCCTCACCTACCAGCTGTACAATGACATCGCCAACTTCCAGAATGTGGAGAGCAGCTCCCAGGTGGCCGTGATCCTCACCATGCTGCAGACTCTGCCCGATGAGAACTACGCGGCGCTCAAGTACCTCATGCAGTTCCTCGTAACGGGCTCCGCGGGCCGCCGACGGGCTTCGCCTGAGGACTGGTGTTTAACCGGGGACTGTAAAGATAAAAACGTGACCGAGCACAGCGCCCAGAACCGGATGGACTCCGCCAACCTGGCCGTGGTGTTCGGACCCAACCTGCTCTGGGGGCAAGACGCCGCCATGAGCCTGAGCGCCATCGGCCCCATCAACAACTTCACCCGCATCCTCCTGGACCACTACGGCCAGGTGTTCGAGGGCAGCAGCCCGTAACCGCGCGGCCCCCCAGCCCAGCCCCGCCCCCACACTCCCCGGGAGCGCACAGTATTGTCCGGTGCCAAGTACGCTCCGTGTTAAGAGTCGTATACAGGAATCACGAGAACACAAGATGGAAACGGGAATCGCTCCGACTGCAGGAAGCCGGCTTTCTGTTCTTAAAAGCTCTTAACTGCCGGCCTGGGAAAGCATACCGCTTAGTTTCGGCAAATCTCTCTCAACTCAAATAAGaagccaatgttttttttctagctCTTCTATTACAATCCCAGTTCTGACACTCCCAGACCGGccttttactattattatggtACATTAAACACTACACTGATGTAGGTACCACGAGGACTGATCTCACTCTGGAGGCATTAAGCTCACGTACTGCTTCTCCACTCCTTTAGTGATTTGTCTGAGAGCACACAGGCGACACAGAGATGGTTTATAATGGTGCATCTCTGCATgtaaacagctttttttttttttgctggggGTTCGGGTTGATTCACACGCTCGGCTAATAAGATTTAAGCTGAAGTTCCAGCAAACATGCAACACATGATTTCCTGATTGATAGTTTATTTTACgagatggaaaaatacattcctgTTAGAGGAACGGACATGGTTTCTAAGTCTGAGCATTTTTAATGGCTATACAACTGTGTCATTTattagaaaatattgtttttatgttacaatattgttgaaatatatatattattgatttatttccttcaGTATTCTCTTTGGAACTTAGAGACATTCTGGACCTCAAAGTGAAGGTGGACAGTTTTCTTTGACGTTTTGCTGTTGATATTTTTCTATCGTTGCCTCTCAAGACTCTTATCTTCTTGTCCAGTTTAATATCTTCCCGTTTCTACAGCTTAGACTCTGCTCTGTCtggtttacaatatatatttacaatatactcTCTTTAAATCGTATACTTTGAGTTATAGAATGTTATTTTGTCCTTCCGAACTAGTTTTTGTATGCACTATTGTGATTAGTTTGATCAAAACGTGTCTTTGGGAatttttgaaagattttttaaaatttgattgTCACGTCAAAAAACGGAACGGATTATTGCAAAACACTAACGATCCAGACAGCTCATTTAACAGAGCCAGTGTGATTGTGGCCAGCCCTTGTCTTGGGCCTCCAAATCCAAAACATGCGGCAGTTTCCACCGATAGAACCCCCCCATGTCCTTCCTGAAGCTGTTCCTCTGGATCCCCCAGCTTTCAAGCACTTCCGCTATCATGCGTCTCTCACTTGTGATTATTCTCTCCTGGCAGCTGCAGCCGGGACAGGAAACGATGCGGCTTTTTGCTTTCGTTGACAGCAGCTTTAGATCTGGAATACAGTTAGATGTGATGTGGGTCTGCCGTGACTCATTCAGACTGAACTGCGCTGGTCAAGTAGAAGCCACACATGGGTTTGATTTggagattgattgattgataggtGTGGtcactttttccccctcattgttttttaaaggtacTTCTTTGGTATGCTTATTTGTTTAACTGGTGTTCAACTGCTCTATCTAAAGATACTTGACATCTTTTTACTTCTTTAAAGAGTTTGAAGATTCAAGCATAAAAAAGTCCAAACTATGTTATTTACCTGACACTGAACATTTTGTATTGGGGTCTCGAAGAAAAACCAGGGGGACGTATATTCAAAGATGATCCTGTTTgataaaggctttttttttggtttagagTAATACATCTATTTACTCGAGTGAATTCAGTTGACCTCCAGTAGCCGTGATGTTTTACTAGCGATTAATTAAGACTGAGAGCCATGCAGTGCGATCAGCTGTGTGCCTTATTTCAGTGCAGGCAAGAAGACAGAGAAACCGATGCTGTTCGAATGCCATCGGTCAGATACCATGCGGTTGTGTTGCCATGTGAATCTGTCACCCGTTTTATGTACTGTGTCGCTGCGTCTTGTGAACTTTGTAAAGAcagataattttatttttctgcggCCGTTGCGGCGAAAATAAAATGCGGTTCTGCATTTGTCCTGCTTTAAGAAGCCAAattcctcctctttgttcttCAAGGTTGACCTTTTTTTATCTGTTGTGAATTATACAGCGATTGTATTGaagtatataataaatattgaagctgtt

Function

GO: NA

KEGG:

id description
K18470 ARHGAP1, CDC42GAP; Rho GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007149 True 3647 mRNA 0.47 14 5471104 5485827

Neighbor

gene id symbol gene type direction distance location
AMCG00007145 LOC107722349 coding downstream 23734 5438262 ~ 5447370 (-)
AMCG00007139 creb3l1 coding downstream 151865 5308415 ~ 5319239 (-)
AMCG00007140 NA coding downstream 166973 5302051 ~ 5304131 (-)
AMCG00007138 dgkz,LOC106561949,LOC106587110 coding downstream 262068 5166895 ~ 5209036 (-)
AMCG00007136 dgkz,LOC106561949 coding downstream 319122 5149203 ~ 5151982 (-)
AMCG00007153 f2,LOC107554629 coding upstream 3368 5489195 ~ 5493804 (-)
AMCG00007151 NA coding upstream 11121 5496948 ~ 5501797 (-)
AMCG00007152 NA coding upstream 41155 5526982 ~ 5552311 (-)
AMCG00007150 NA coding upstream 94957 5580784 ~ 5588229 (-)
AMCG00007156 rapsn coding upstream 107047 5592874 ~ 5605868 (-)
G21462 NA non-coding downstream 338562 5132328 ~ 5132542 (-)
G21423 NA non-coding downstream 443378 5027202 ~ 5027726 (-)
G21419 NA non-coding downstream 507544 4963357 ~ 4963560 (-)
G21418 NA non-coding downstream 511351 4959516 ~ 4959753 (-)
G21414 NA non-coding downstream 525384 4942071 ~ 4945720 (-)
G21522 NA non-coding upstream 9522 5495349 ~ 5495735 (-)
G21535 NA non-coding upstream 29159 5514986 ~ 5515971 (-)
G21537 prdm11,LOC106560765 non-coding upstream 31400 5517227 ~ 5518751 (-)
G21536 NA non-coding upstream 35788 5521615 ~ 5523677 (-)
G21550 NA non-coding upstream 73767 5559594 ~ 5562208 (-)
G21429 NA other downstream 413698 5056787 ~ 5057406 (-)
G21426 NA other downstream 421584 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 1970434 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2807455 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3274249 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 330982 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 521813 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1838597 7324424 ~ 7342341 (-)
G21942 NA other upstream 2013620 7499447 ~ 7506875 (-)
G22200 NA other upstream 2907369 8393196 ~ 8396224 (-)

Expression


Co-expression Network