AMCG00007152


Basic Information

Item Value
gene id AMCG00007152
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5526982 ~ 5552311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007152
ATGGGCAGCGCCGGGGTGTGCGGGGAGATTGGACGGGTTTTCGCGTTTGCTGCTCGAATGATTTTCTCTGCCCCTGTCATTGCTCTGGGTGCCACTCTGGGCACGGCGTCGGGCATCCTTGCCATCTGTGGACTGTCATTCCTCTGCAAGACTTACAGGAAAGGACTGTCTGATGAGGATGAAGAATCGGATCCCGAAAAGACCAAACCCAGCGTGTTTCATTCCGCCCAGCAGTTCAGCATTAAAAAATCCACAGAGCCCATCCAGCCCAGGACTCTCCTGAAGTTTCCCAAAATTTACAAGCCCAAGCCGGCGGTCACCTGCCCAGAAGTGATTAATTACACCGATTACACCTTGGAGACGACCAACGAGCCTCCATCTGAGACAGCTGGCGAGCCAGACGATAGTAGCCTAGCAACGGAGGGATGTGAAGAGGTCTTTATCATCCCCAGGCAAGCGGAGCACGTGAGCGTGGAAGCGGGCAGCGACGGCTACATCGTGGGCCTGATGACCACGGCGTCGGGCAGGAAGGAGGCCCAGACCACCATGCGTCGCCTGACGCCCCATGTGCTGTGGGAGGAGCCGCTGGTGTTCCCACTGCCCGAGGGCTACGAGGTGGAGGGGGAGATCGCCCTGTCGCTGTACAGCTGCGACCGCTTCTCCCGGCACGCCAACCTGGGCGACGTGAGCGTGTCGGTGGGCGAGCTCCTCCTCTCTATCAGCTACCTGCCGGCTGCCAACCGCCTGGGGGTGGTGGTGATGAAGGCGCGGGGGCTGCAGTCAGACAAGCTTAAAGACGTGATCGACATCTCGGTGAAGCTGGCCCTGAAGCACCAGGCCACCAAGCTCAAGAAGAAGCAGACGCGCAGGGTGAAGCACAAGATGAACCCGGTGTGGAACGAGATGATGATGTTGGAGGTGCCCCACGAGCTGCTGTCCAAGtccagcctggagctggaggtGCTCAACCAGGCGGGGACGGGCGCCGGCGGCCTGCAGTCTCTGGGCCGCTGCTCCCTGGGGCTGCAGACCAGCGGCACGGGGCTCCAGCACTGGCAGCAGATGCTGAACAACCCCAGGAAACAGATCGCCATGTGGCACCCCCTGTACGGGAAGTGGGGTGGGAGAAGATTAACCCTAAGGAAGGCGTTCCTCCAGCATCACCCGTCGGGTCCTGACACGGAACAACCCCAGGAGACCAAACAGTACCTGGGCAAGATGGGCTGCTTCCGAGACGCTCTGCTGTCTGACTCACGTCCCACGGGAGGCCAGGAGCGTTTCCTGGGAAACGACGAAGAACACGGCTCATGTTTGCGCTCACCAAGGACGGCACATGCAGccgcggaggaggaggaggagccggtCTGTGAAGGCAGCCGTCTCTGA

Function

GO: NA

KEGG:

id description
K19913 SYT13; synaptotagmin-13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007152 True 1386 mRNA 0.61 8 5526982 5552311

Neighbor

gene id symbol gene type direction distance location
AMCG00007151 NA coding downstream 25185 5496948 ~ 5501797 (-)
AMCG00007153 f2,LOC107554629 coding downstream 33178 5489195 ~ 5493804 (-)
AMCG00007149 NA coding downstream 41155 5471104 ~ 5485827 (-)
AMCG00007145 LOC107722349 coding downstream 79612 5438262 ~ 5447370 (-)
AMCG00007139 creb3l1 coding downstream 207743 5308415 ~ 5319239 (-)
AMCG00007150 NA coding upstream 28473 5580784 ~ 5588229 (-)
AMCG00007156 rapsn coding upstream 40563 5592874 ~ 5605868 (-)
AMCG00007158 celf1,LOC106561939 coding upstream 61437 5613748 ~ 5628372 (-)
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding upstream 121866 5674177 ~ 5677569 (-)
AMCG00007162 NA coding upstream 139831 5692142 ~ 5693305 (-)
G21536 NA non-coding downstream 3305 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 8231 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 11011 5514986 ~ 5515971 (-)
G21522 NA non-coding downstream 31247 5495349 ~ 5495735 (-)
G21462 NA non-coding downstream 394440 5132328 ~ 5132542 (-)
G21550 NA non-coding upstream 7283 5559594 ~ 5562208 (-)
G21582 NA non-coding upstream 168952 5721263 ~ 5721542 (-)
G21646 NA non-coding upstream 362761 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 788468 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 966812 6519123 ~ 6519736 (-)
G21429 NA other downstream 469576 5056787 ~ 5057406 (-)
G21426 NA other downstream 477462 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2026312 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2863333 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3330127 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 264498 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 455329 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1772113 7324424 ~ 7342341 (-)
G21942 NA other upstream 1947136 7499447 ~ 7506875 (-)
G22200 NA other upstream 2840885 8393196 ~ 8396224 (-)

Expression


Co-expression Network