AMCG00007153 (f2,LOC107554629)


Basic Information

Item Value
gene id AMCG00007153
gene name f2,LOC107554629
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5489195 ~ 5493804 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007153
ATGAAGCCAGGGAATCTGGAACGGGAATGTCTGGAGGAGATCTGTGACCACGAGGAAGCCCGGGAGGTCTTTGAGGACGTGGGGAAGACCGAAGACTTTTGGAAGAGATACTTGGcCTGTTACGGAAAACGAACCAAGACGAATATACAGCCACTGAGGACTTGTTTGGAcgGGTTCGGTCCTGACGACACCACCAGAGGGGATGCTTGTGAAGGGGACAGTGGAGGTCCGTTTGTCATGAAGAATCCAGAGGATAACCGTTGGTATCAGATTGGGATCGTGTCGTGGGGAGAAGGCTGCGACCGAATCGGAAAATACGGGTTCTACACACACTTGTTTCGCATGAGAAAGTGGATGTTGAAAGTCATCGAGGGTTCGGGTACTGATTGA

Function

symbol description
f2 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within blood coagulation. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including X-linked recessive disease (multiple); appendicitis; artery disease (multiple); autoimmune disease (multiple); and thrombophilia (multiple). Orthologous to human F2 (coagulation factor II, thrombin).

NR:

description
PREDICTED: prothrombin

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007153 True 390 mRNA 0.52 5 5489195 5493804

Neighbor

gene id symbol gene type direction distance location
AMCG00007149 NA coding downstream 3368 5471104 ~ 5485827 (-)
AMCG00007145 LOC107722349 coding downstream 41825 5438262 ~ 5447370 (-)
AMCG00007139 creb3l1 coding downstream 169956 5308415 ~ 5319239 (-)
AMCG00007140 NA coding downstream 185064 5302051 ~ 5304131 (-)
AMCG00007138 dgkz,LOC106561949,LOC106587110 coding downstream 280159 5166895 ~ 5209036 (-)
AMCG00007151 NA coding upstream 3144 5496948 ~ 5501797 (-)
AMCG00007152 NA coding upstream 33178 5526982 ~ 5552311 (-)
AMCG00007150 NA coding upstream 86980 5580784 ~ 5588229 (-)
AMCG00007156 rapsn coding upstream 99070 5592874 ~ 5605868 (-)
AMCG00007158 celf1,LOC106561939 coding upstream 119944 5613748 ~ 5628372 (-)
G21462 NA non-coding downstream 356653 5132328 ~ 5132542 (-)
G21423 NA non-coding downstream 461469 5027202 ~ 5027726 (-)
G21419 NA non-coding downstream 525635 4963357 ~ 4963560 (-)
G21418 NA non-coding downstream 529442 4959516 ~ 4959753 (-)
G21414 NA non-coding downstream 543475 4942071 ~ 4945720 (-)
G21522 NA non-coding upstream 1545 5495349 ~ 5495735 (-)
G21535 NA non-coding upstream 21182 5514986 ~ 5515971 (-)
G21537 prdm11,LOC106560765 non-coding upstream 23423 5517227 ~ 5518751 (-)
G21536 NA non-coding upstream 27811 5521615 ~ 5523677 (-)
G21550 NA non-coding upstream 65790 5559594 ~ 5562208 (-)
G21429 NA other downstream 431789 5056787 ~ 5057406 (-)
G21426 NA other downstream 439675 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 1988525 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2825546 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3292340 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 323005 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 513836 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1830620 7324424 ~ 7342341 (-)
G21942 NA other upstream 2005643 7499447 ~ 7506875 (-)
G22200 NA other upstream 2899392 8393196 ~ 8396224 (-)

Expression


Co-expression Network