AMCG00007156 (rapsn)


Basic Information

Item Value
gene id AMCG00007156
gene name rapsn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5592874 ~ 5605868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007156
CGAGCCGCTCTCCGACTGCCATGCCAGACCTTGCGTTCGCTCTCATGTCCGGCTCCCTCGGCTCCTCTGGTCTCTGCCCCGCTCTGGAGGAAGAGGTCTCTCCGTGTCTCGGCCACCAGCAATTGAACCCCGTGGCCTCTTGGGTCTGCCAGCTGGCATTGCCTTTGATTGTTGAGACCCTCAACGCTCACGAATCCCCCTTGGCTTTCTCAACTTGCTCTGCTTTTCTCCGATGCCCCTGATACTCAATTTTTCAGGGCTGAGGATTAAAGAGtgagagtttttttattttttatttcctcttctcctcttctcctctcctggGTTCCTGGTGAATTTTCCTGAAGCCACATCCAGTCTGAGCCCCTCATCTGTTGTCTTTTCTCCACCCTATGTTGTGGAGTGGATGAGCATTTTTATGAGGCAGTTTGCAGCAGAAATGGGCCAGGACCAAACCAAACAGCAGATCGAGAAGGGCCTGCACCTGTACCAGACCAATCAGACGGACAAAGCCCTGCACGTGTGGCTGAAGGTTCTGGAGAAGACCTCTGACCCGGGAGGGAAGTTCAGGGTGCTGGGTTGTCTCATCACTGCCCATTCGGAGATGGGAAAGTACAAGGAGATGCTCAAGATCGACACTGCCAGAGAGATGGAGGACCCGGATTACCTGACGGAGGGCTACCTCAACCTGGCGCGGAGCAACGAGAAGCTCTGCGACTTCCAGAAGGCCATCTCCTACTGCAAGACCTGCCTCAACATGCAGGGCACCACCATCAGCCTGCAGCTTAATGGCCAGGTGTGCCTCAGCATGGGCAATGCCTTCCTGGGGCTGGGTGTCTTCCAGAATGCCCTGGAGAACTACGAGAAGGCCCTCCGCTACGCGCACAACAACGACGACAAGATGCTCGAGTGCCGGGTCTGCTGCAGCCTCGGCAGCTTCTACATCCAGCTCAAGGACTACGAGAAGGCCCTGTTCTTCCCGTGTAAAGCGGCCGAACTGGTCAACGACTACGGCAAGGGCTGGAGCCTGAAGTACCGTGCCATGAGCCAGTACCACATGTCCGTGGCCTACAGGAAGATGGGCCGCTTGCCGGACGCTATGGAGTGTTGTGAGGAGTCGATGAAGATCGCCCTGCAGCACGGAGACCGGCCCCTGCAGGCCCTGTGTCTGCTGAACTTCGCTGACATTCACCGGAACCGGAGCGACGTGGAGAAAGCATTCCCTCGATACGAGTCCTCGATGTGTATAATGACGGAGATCGGCAATCGCCTCGGACAGGCACACATCTACCTGGGGGTGGCCAAGAGCTGGCTTATACAGAAGGAGCTGGACAAGGCTCTCGAAGCTCTGCAAAGGGCACAGGAGCTGTCTGAGGCCGTGGGGAACAAGGTGCACTGCCTGAGCGAGGCTGTGTACCGCAGCCGGGAGCAGCAGGATGACCTGAGGGAGCAGGTGGTGAAGTTCCTGGAGTGCGTGGAAGAGATGGAGCTGTACTGCGGCATGTGCGGCGAGTCAATCGGCGAGAGGAACCAGCAGCTGCAGGCCCTGCCCTGCTCCCACGTCTTCCACTTGAAGTGTCTGCAATCCAATGGGACGAAGGGCTGTCCGAAGTGCCGTCGGGCGTCCGTGAAGCCAGGCTTCGTGTGAGCTTGCCCCATCCACCCCTGGATCGGGACTCGCCCACGACCCGCAGGATGCCACATGGGATGCCCACTTCCTGTCTGGCCTGAGGGGGTGGTGCTGCTCCCCCGGACTCGCTCTGGGACTTGGAGCGCAGCCGTCTACTTTCAAACGGGCATCAGAGAGACTCTCAGACAAGAAAGGACTGCGCTGCCAAACTAGCTCAGCAGCCTGAGGTCCAGAGTCTGTTTTTTGATGCGTCAAGAAGGGACATTTCTCTGAAAACTAATGACGGTGTGGAATGTAACCCCCAGGTCCCCGTTTGCCAAGTTACAGACATGCAGGTGACCATAGTCTCATCAAACACTGCCTTATTGTACCATGTACCTCCACgtccagtgtttttgtttttctatcacTGACTGAAGAGCTGTTGGTTATTTGTTGACAATGTGTGATGCGGGGGACCCCACTGAACACTGTGTTTGTACTCGTGTGAAAAGCATGTGTTCAGTGCCACAGCCCCCTGGCAGTGATCTACCCACCACGCGTGTTTAGGTCACCTGTGTGAAACACCTCATGTGGGTTTAGGAAATGCTCATTTACCAGCAACAGTTCTGTTAGAACATTTCTGTTAGAAAAAACATCATacgtgcagagagagagagaaagaatccAAATCTGCAGGTTATAtgatagttaggtccataaatatgtggacagtgacacaattgtcatcattttggctctgtacgacaccacaatggatttgaaaggaaacaatcaagatgtcctatattatctgctcagattcagccagaTGCTTCTCAACTGCAGAtggacccaaagcatactgcgacAGCAACCCAAGAcctttttaaggtgaagaagtggaattttctgcaatggccaagtcagtcacctgacctgaatccaattgagcagcatttcacttgctgaaggcaaaactgaaggcaaaacccccaagaacaagcaggactaaaggcagctgcagtccaggcctggcagagcatcactgg

Function

symbol description
rapsn Predicted to enable acetylcholine receptor binding activity; metal ion binding activity; and protein-membrane adaptor activity. Acts upstream of or within chemical synaptic transmission and synapse assembly. Predicted to be located in synapse. Is expressed in muscle cell; musculature system; myotome; and pectoral fin musculature. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 11 and fetal akinesia deformation sequence syndrome 2. Orthologous to human RAPSN (receptor associated protein of the synapse).

NR:

description
PREDICTED: 43 kDa receptor-associated protein of the synapse

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0005856 cytoskeleton cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0033130 acetylcholine receptor binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24924 RAPSN; receptor-associated protein of the synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007156 True 2661 mRNA 0.54 8 5592874 5605868

Neighbor

gene id symbol gene type direction distance location
AMCG00007150 NA coding downstream 4645 5580784 ~ 5588229 (-)
AMCG00007152 NA coding downstream 40563 5526982 ~ 5552311 (-)
AMCG00007151 NA coding downstream 91077 5496948 ~ 5501797 (-)
AMCG00007153 f2,LOC107554629 coding downstream 99070 5489195 ~ 5493804 (-)
AMCG00007149 NA coding downstream 107047 5471104 ~ 5485827 (-)
AMCG00007158 celf1,LOC106561939 coding upstream 7880 5613748 ~ 5628372 (-)
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding upstream 68309 5674177 ~ 5677569 (-)
AMCG00007162 NA coding upstream 86274 5692142 ~ 5693305 (-)
AMCG00007163 NA coding upstream 128806 5734674 ~ 5752971 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding upstream 220757 5826625 ~ 5841867 (-)
G21550 NA non-coding downstream 30666 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 69197 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 74123 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 76903 5514986 ~ 5515971 (-)
G21522 NA non-coding downstream 97139 5495349 ~ 5495735 (-)
G21582 NA non-coding upstream 115395 5721263 ~ 5721542 (-)
G21646 NA non-coding upstream 309204 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 734911 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 913255 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 960349 6566217 ~ 6569739 (-)
G21429 NA other downstream 535468 5056787 ~ 5057406 (-)
G21426 NA other downstream 543354 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2092204 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2929225 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3396019 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 210941 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 401772 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1718556 7324424 ~ 7342341 (-)
G21942 NA other upstream 1893579 7499447 ~ 7506875 (-)
G22200 NA other upstream 2787328 8393196 ~ 8396224 (-)

Expression


Co-expression Network