AMCG00007160


Basic Information

Item Value
gene id AMCG00007160
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5757677 ~ 5775456 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007160
AAACTATGCAAACTAAAGTCTCGTACGCCGAAACGCGGCACTGTCTCTTTAAGAGTTTGAACGCAGCCGATGGCGCGTCTCTTCGGACACTTCCTGCTGCCTCCCAGGGTGCACCGCGGCGAAGATGGCGGCGGCTGTGGAGAGGAGTTTCATAGAGATCTGCGGGTTCGAGAGGGAAACCCTGCAGAGGTTCCGAGACATAACCGTCAACCCAGGTGTGAACGCTCTTCCTGGGGTCAGGTATGCTGACAGCGCCGGAGGATTTTACTACGAAGAGAGCGGCAAACTTCTGTCGGTTACGAGCAACCGGTTCATACACTGGAGCACCTCGGGGGACACGGTGCAGCTGGTGGAGCAGTCTCTGGACACCAACCTCCTGAACAACTCGCTCCGTCTGAAGATCGTCAACTGCACCCTGCTGCCCGGGGGCGTCCACATCCAGGAGACCTACAACCATGTCATCATCCTCCTCGTCACCAACCAGACGGTGCACCGGCTGGTGCTGCCCCACCCGTCACGCATGTACCGCAGTGAGCTGGTCACAGAGCTGCAGATgcagtccatattcaccgacGTGGGGAAGCTGAACCTGAGGGACCCCTCGACCTACTTCGTGATCCCCGCCGTGCCAGGCCAGGTGCCCCCCTCCAGCGCCTCTGCGGCCTGGGTCAGCGGTGACGGGGAGGCTCACTTCGCCGTGGCATCGGTGGCGGGGGGCATGCTGATCGTCCGTCTGCCCGCCCATGATGTGCAAGGAAGTGTGTCTGTCCTGGAGCTGAAGCAGAGCTCTGTGGTCCAGCGCTTCCTGGCGGGCTGGATGCCAACAGCCATgagGGGTGACCAGAGCCCCTCAGACGTGCCCCTGAGTCTGGCCGTGAGGCAGCTGGAGAGCGACACCTTCATCTTCGCCCTGTGTCAGGATCACAAGCTGCGCATGTGGTCGTACAAAGACCAGATGTGCCTGATGGTGGCCGACATGCTGGAGTACATGCCGGTGAACAGGGATGTGAGGAGCAGCCTGGGCCAGGGCCACAAGCTGCGCCtgtccttctcctcctccaccgGCCTCTGCCTGGGCGTCTACCTCAACATCCCCAAGAGAGGGCAGTTCTGCGTCTTCCAGCTTGTGAGCACGGAGAGCAACCGCTTCAGCCTGGACCACATCTCCTCGCTGTTTGCCACGCAGgagaCTCTGGTGGATTTCTCTCTGACCTCCACCGACGTCTGGGCGCTCTGGCTGGACGATGAGAACCAGACGGTTGTGAAGTACATCAACTTTGAGCATAACACGGCAGGTCAGTGGAACCAGGAGACCTATCTGGAAACGCTCTTCTCTCCCGGGAGGTTCACGGCCTCGGCTCTGCTCAAGGCGCTGCAGATCTACCGCAGGGGCGCCGAGAGGATCGCCGACCTCTCCTGGGAGGCTCTGAAGAAAGAGGTGACGGTTGCGGTGGAGAGTGAACTCCAGGGCAGCGTGACGGAGTACGAGTTCTCCCAGGAGGAGTACCGCCAACTGCAGGTCGAGTTCTGGTCCAAGTTCTACGCCTGCTGTCTGCAATACCAGGAGGACCTGTCTGCCCCGCTCGCCCTGCACATCAACCCCTGCACCTCCACAGTGTGCCTACTGAAGAAGGGGTTCATGTCTTTCCTGGTCCCCTGCTTTGCTGTTGATCACCTGTACCTGTCCTCTGACGACAACCTGTCCTCTGAAGAAGAGACTCCCCTCGCGGAAGACCCGGACGTGGCGCGGGACGTCCTGCAGCTGGTGCAGTGCCTGCGGATGGTGGGGGAGTCGGTGTCGGGGGAGATGGCCTACATCATCGAGAAGGCCCTGGAGCACCTGCAGTCCCCGGAGTGTGCGGCCGAGCAGGTGTTGGAGATCCTGCTGGCCAATGACAACGATAACGTCATCGAGGACATCCAGAACAAACTACAAGACATCAGGAACCCAGTGAACGCCATGGCCATCCTTCTGCGGGAGATGGACTACGAGACAGAGGCCGAGATGGAGGGGAATCTGGCAGCGGCCCAGCCACTCGGCGTGCGCGTTAACCTGTCCCAGCTGTACGGCAGCAGCCCGGCGGTGGCGGTGGTGTGCCAGGCGGTGTGTCAGAGTGCCATGACCCGGGTGCTCTTCTGCAGGGACCTGCTCATCCTGCAACAGCTCTACCTGCGCCTGGGAGACCACgtgtaCCTGGGCGGGGGGGGGCAGCTCCTCCAGATGCAGCAGGACCTCATCCCGAGGACGGCCTACCTGCTCTGCTCCTACTACCTGGTCCGGTGGGCCAGCCAGTGCCTGTCCACTGCCGTGCCTCTGGACACGCTAGACGCCAACTTGCAGCACCTCTCCGTCCTGGAGCTGTCCGACTCGCCCGCCTTGAGCCCCAATAAATCCGTGCTGAGCCCCCAGACCGTGGTCGAGCTGTTCTACCAGAACGTGGCCCGGCGGGTCATCGTGTCCCAGATCTACGCGCAGCAGAACACGCCTCTGAGCCAAGCTGCCCTGAACTGGCCGCAGATGATCTCCGCCATCGTGGGCTACCTCTCCCAGCACCTATGGCCGAGCAATCCAGGCTTCCTGTTCCCAGAGTGTCTCATGGGAAATTGCCAGTACACCCAACTGCAAGTGAACGTGGGGTCCTGCCGGTTTGTGCTGGGACAGTGCTATCTGGCCACTGGGGAAGGACACAAGgcCCTGCAGTGTTTCCAGGAAGCGGCCACGGAGGTGGAGAGGGAGAACTTCCTGCTGCGCCTGACTggcacagaggaggaggaggaagcggCCACTGCCCCCCGCCTGCAGTATTACAACAAGgtgCTGCGCTTGCTGGAGGATGTGGGCCTGCCCGAGCTGGTCATTCAGCTGGCCACCATGGCCATCCCCGAGGCCGCCAACGATGTCAGGAGCCAGGCGGCTCTGAGAACCCGAATCTTCAAACACCACCTGGACCTCGGACACAATAGCCAGGCCTATGAGGCGCTGACTCAGAACCCGGACTCCAGCAGGCAGCTGGATTGCCTGCGCCAGCTGGTGGTGGTCCTATGTGAGCGCGCCCAGCTACGGGACCTGGTGCAGTTCCCCTATGTCAACCTGCATGACGAGGTGGTCAGTATTATCGAGTCACGCGCCCGAGCCGTGGACCTGATGACCCACAATTACTATGAGCTGCTCTACGCTTTTCACATCAACCGGCACAACTACAGGAAAGCCGGCACCGTGATGTTCGAGTACGGCATGCGTCTGGGCAGGGAGGTGCGCACCCGCCACGGGCTGCAGAAGCAGTATGAACGCCCAGGCACGTCCCCGAAGAGGAGCCACGATGGAGAGAGCGCGGCCGGCCCAGTCAGTCGCCAGATTGAGATCCTGGAGCTGAAGGACTTGGAGAAGGAATACACGCTGGCCCGCAGCCGCCTGACGCTTGCCCAACATGACCCGGCCGCGGCGGCCATTGCAGGCAGCGCCTCCGCGGTGGAGATGGTGGCCCTGCTGGTACAAGCCGGGCTCTACGACTCGGCGCTGTCCCTCTGTCAGACCTTCCAGCTGCCCCTGAACTCTGTCTTTGAGGGTCTGGCCTTCAAGTGTATCAAACTGCAGTACAATGGCGAGGCGGGGCAGAACGAGGCGTGGAACTGGCTCGCGGCCAATCAGCTGTCCTCGGTCATCACAACCAAAGAGTACAGCGCCACGGACGAGGCCTGGCGTTTGCTGTCGTCTTACCTGGACAGCTACCCGTCCCAGAACGCGCAGTACCACCGCTGTGTCATCAACAAGCTGCTGTCGCACGGGGTGCCCCTGCCGGACTGGCTGGTGAACGGATACAAGGCAAGGAACCGCACATCCAGAGAGTCCGGTGTCGTCCCCGGGGCCGTGGACGCCGCCGGTTTACTCCGCCTCTACCTGAACTTCGACCTCCTGGAGCCGGCGGTGGAGCTGGTTCTGGAGTACGTGGACGCGTTGCTGGGGAAGGGCCACCAGTACTTTGGGATTGAGAGGCCTCTGTCAGCCACCGCTCCTCTGGTCTGGCTTCCGTACGTTTCTATTGATCAGCTGCTACAGGCGCTCCACGAGAACCAGGCCAACACCAATAATTCCAGACTGTACAACAAGCTGCAGGAGTCGCTGGCTCACTACTACACCATCGTGGAGCAAGCCACCATCCGCAGGCAGAAGAGCGCGTAGGAGACGCTGCCCCAGGGGTCCGTGCGGGGGTCTCTCCGCAGCCCTGCCTTCTCACTTGGTGCTCATATCCTCCATCAACCGGTTTTAACAAACATCCATAGTCAtttgaaatttatttttctaccgcaagaaacgaaacaaaacccaggaatgtgtatttatatgacCATGTgtggatgattttttttttctgtaaatgtaagtTCACCGCCTGTAATACGAAATTATTCGCACGAAAGCAATCGATTTGCTCTCATATTGGGAAAACGGGAGGCGAAATGGGCCCGGTCTCTGTATGTTGCTGCCGTGTTGCTGTGGTCCCCCCATGTCAGAagatgtacagtatgtgtgtgtgatccgTTTTGTTCCCCTTAGAATGTTTGACTGGTGAAAATTCTAGAATGTGTGTCACTAGAATCCagagtaaatatattttcttttttatatatgaaagTACACTATAACAAACTCCTCCTCGTCCTTACTTTTCTGACGGACTCGTTGTCTTTTGTACTCAGCCTGCTGGGTTCCGCCAGCAGGTCAACTGTAAATTTTTGGAGCTTTCTTaaaatttgttttctgtactgtatttacaattaaaggaaaaaatgtcactgtacaa
>TU27021
CCCGCAGGCCGTGGACGCCGCCGGTTTACTCCGCCTCTACCTGAACTTCGACCTCCTGGAGCCGGCGGTGGAGCTGGTTCTGGAGTACGTGGACGCGTTGCTGGGGAAGGGCCACCAGTACTTTGGGATTGAGAGGCCTCTGTCAGCCACCGCTCCTCTGGTCTGGCTTCCGTACGTTTCTATTGATCAGCTGCTACAGGCGCTCCACGAGAACCAGGCCAACACCAATAATTCCAGACTGTACAACAAGCTGCAGGAGTCGCTGGCTCACTACTACACCATCGTGGAGCAAGCCACCATCCGCAGGCAGAAGAGCGCGTAGGAGACGCTGCCCCAGGGGTCCGTGCGGGGGTCTCTCCGCAGCCCTGCCTTCTCACTTGGTGCTCATATCCTCCATCAACCGGTTTTAACAAACATCCATAGTCAtttgaaatttatttttctaccgcaagaaacgaaacaaaacccaggaatgtgtatttatatgacCATGTgtggatgattttttttttctgtaaatgtaagtTCACCGCCTGTAATACGAAATTATTCGCACGAAAGCAATCGATTTGCTCTCATATTGGGAAAACGGGAGGCGAAATGGGCCCGGTCTCTGTATGTTGCTGCCGTGTTGCTGTGGTCCCCCCATGTCAGAagatgtacagtatgtgtgtgtgatccgTTTTGTTCCCCTTAGAATGTTTGACTGGTGAAAATTCTAGAATGTGTGTCACTAGAATCCagagtaaatatattttcttttttatatatgaaagTACACTATAACAAACTCCTCCTCGTCCTTACTTTTCTGACGGACTCGTTGTCTTTTGTACTCAGCCTGCTGGGTTCCGCCAGCAGGTCAACTGTAAATTTTTGGAGCTTTCTTaaaatttgttttctgtactgtatttacaattaaaggaaaaaatgtcactgtacaatgtgttttatgtattattactgaTGGGTACTATTCTGT

Function

GO: NA

KEGG:

id description
K14303 NUP160, NUP120; nuclear pore complex protein Nup160

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007160 True 4802 mRNA 0.59 35 5757677 5775418
TU27021 False 982 lncRNA 0.47 3 5774049 5775456

Neighbor

gene id symbol gene type direction distance location
AMCG00007161 NA coding upstream 64611 5686196 ~ 5693066 (+)
AMCG00007155 ndufs3 coding upstream 72297 5681848 ~ 5685380 (+)
AMCG00007142 NA coding upstream 286645 5466057 ~ 5471032 (+)
AMCG00007143 atg13,LOC106587118 coding upstream 292596 5451977 ~ 5465081 (+)
AMCG00007144 NA coding upstream 320983 5423438 ~ 5436694 (+)
AMCG00007159 fnbp4 coding downstream 774 5776230 ~ 5787911 (+)
AMCG00007164 NA coding downstream 13220 5788676 ~ 5805700 (+)
AMCG00007165 mtch2,LOC106587126 coding downstream 31426 5806882 ~ 5816264 (+)
AMCG00007166 psmc3,prs6a coding downstream 41111 5816567 ~ 5823146 (+)
AMCG00007169 NA coding downstream 169639 5945095 ~ 5949337 (+)
G21585 NA non-coding upstream 4752 5747940 ~ 5752925 (+)
G21528 NA non-coding upstream 243535 5513794 ~ 5514142 (+)
G21521 NA non-coding upstream 262006 5495349 ~ 5495671 (+)
G21416 NA non-coding upstream 708994 5044629 ~ 5048683 (+)
G21292 NA non-coding upstream 1382329 4375136 ~ 4375348 (+)
G21683 NA non-coding downstream 303287 6078743 ~ 6125287 (+)
G21713 NA non-coding downstream 381163 6156619 ~ 6158951 (+)
G21715 NA non-coding downstream 433379 6208835 ~ 6209270 (+)
G21749 NA non-coding downstream 772224 6547680 ~ 6547886 (+)
G21750 NA non-coding downstream 779042 6554498 ~ 6554861 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 85532 5668196 ~ 5672145 (+)
AMCG00007148 NA other upstream 177383 5565941 ~ 5580294 (+)
AMCG00007147 fbxo3 other upstream 195523 5552393 ~ 5562154 (+)
AMCG00007146 prdm11,LOC106560765,LOC105018678 other upstream 233964 5505005 ~ 5523713 (+)
AMCG00007134 NA other upstream 714504 5034707 ~ 5043173 (+)
AMCG00007196 svip other downstream 1436108 7211564 ~ 7218475 (+)
G21891 NA other downstream 1598867 7374323 ~ 7378946 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other downstream 2371942 8147398 ~ 8183421 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 2591980 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 2655646 8431102 ~ 8451582 (+)

Expression

AMCG00007160 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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AMCG00007160 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00007160 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network