AMCG00007170


Basic Information

Item Value
gene id AMCG00007170
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5872776 ~ 5896585 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007170
CCGCCGCGGATGTTTGGTTCCGGCGAGGAGACGTGGCTGCGGGAGGAGCTCCGTGCGCTACAGTGCAGCCCTGACGCCGAGAGCCGCAGCGGCTGCGACAGAGCTGCGCGCCTCCCTCAGCGAGCTGGATGGCAGGGACTGTCTGGAGAGAGAGCTCGAGCAATCGCTACAGGTCCCGAGCCCCGTGCTGGTGTGAATCAAGCCTGGATCAGAATGAGAACTCTGAGACCCTCCTTCAATCTACTTGTGTGCCTCTGCGTCGCTGCCCTGCTGTTCGTGTCATCGGGCGCCTCGAGCCACAGAGCCAACACTAAGAAGATGTCTCAGGCGACGGCCGTGCAGGCAGCGGGCGGCTCGTGGGGCTGGAGCACCGAGGACCTGCTGGGCTTCGGGGGGTTCGCCGAGCTCTTCGTGGGAGAGCGGGCGGACGCCTGGTTCTGCTCCCTCATCGGCTCCCTCATGGTGGGGCTCAGCGGGGTCTTCCCTCTCCTGGTCATCCCCATCGAGGCCGGAGCAGCGCTGAAGACCGACGCGGGCTGCCAGAAGCTGAAGCGGCTGCTGAGTTTCGCCATCGGGGGCTTGCTGGGCGATGTGTTCCTGCACCTCCTCCCCGAAGCCTGGGCTTACTCCTGCAGCAGCGCCGGCACAGATGGGAAATCCAGCCGTCACCGTCATCAGCTGCTGGGCCTGTGGGTCATCACCGGCCTGCTGTCCTTCCTCATCGTGGAGAAGATGTTCCCAGACAGAGAGAGCCAGGACGATGCCAAGAGGGAGAGCCAGTGTCCACCGGGCTGCCCGGACGCTGAGCTTAGTTTGCACAGAGGGGCCTGCTGTGGGCTGATAAGCTGTCCGCAAGACAAATCCTCCTCACCGGTGGCCAACGGTCACTGCTGTCATTCGAGTCACTCCACACTAAAGCCAAAGATAACACGGCACCAACCGGACAACAAAATAAAGACTAGCGGGTACCtgaacctggtggccaactgcATCGATAACTTCACCCACGGCCTGGCGGTGGCAGGCAGCTTTCTCGTCAGCAGAAAAGTTGGCTTCCTGACGACCCTCGCCATTCTTCTTCACGAGATACCACACGAGGTGGGAGATTTTGCCATTCTCCTGAGGGCCGGGTTCGACCGCTGGAGCGCCGCGAAGATGCAGCTGTATACCGCCCTGGGGGGGGTCTTGGGCGCCTGCTTTGCACTGTGCGCACAGTCTCCCAAAGGAGCAGAAAATGCTGCATCGTGGATCTTGCCGTTCACGTCGGGTGGCTTCCTCTACATTGCTCTGGTCAACGTTGTGCCCGATCTGCTCCAAGAGACCAATCCCAGAAATTCCCTCCAGCAGATCGGTCTCCTGCTCAGTGGAATAGCAGTGATTCTCCTGATGTCCACAATAGTAGACTGAACCCTAAAGAAACTTCACCGTGTGAAGATTAACCATGAGGGACAAAGACACTCTTCTTCTTTTTAGCTTTAATAACTCCTGGagaacagtatttttttctgtccctGGAAGTGCAACACATTTCTCCCACCCCACCTATCATTTCTCAAGTCTGTTCGGTCTTGTGAAATCCCACCCGGAAGTTATCTGACAATCAACACTGAAGATCTTTCCCTGACTTCCCCAGCATCCTTTGCTCCGCACCGTGAGGCTCACAGGAGGCAGGTGACCTTGAAGTTATCGTActgactggagagagagaaagtaaaaaTGAGGGAAAAAGAGCAGCCTGCCAACTTTACACAAATCCACGTGAATCTGTAGAGCAGCTCCATCCCTCAGAGTCCCAAATCTGAACACGGCATCTCTCCCTACAGGCCAGGTACGAAGTTCGCCAGCCAAAGAAGTGCACTCCTGCTCCACATGAACACAGCCAGCCGGGTTCACACGCCAGATGGGAAAGCAAACCGGCCTGAAATACCGGAGGATTGAAGCTCGGGGCGGAGAGATGTTAGCCTTGCGTTCACGTGGAGACAGGCGTCGAGATCTCAGGATGTTTATGAGGACGATCCTTGGCCTTTGAAAACGGGGAGTGTGAACTGAACTTGAGTAgccacttttattttcattgttttgtgttttgggaGGAAAATAAGTCAAACCTTGTGCTCCGTGTTGGCTGGTCCATTTGCAGTGACCCTACTGTGTGGAGTATCTTCACTGTcatcatttttgtttgcttgaaaGGGCTGTGCAAGAATATTTTGGACACTTCTCTCGTTGTGTAAAGGGAGGGGGTTGTGACGGAGGGAAGGGCATTCGGTTCGACTCATTCCTCCCCACAAAGCACTTTCACATGTTTACCTCAGTCTGTTGGTGCTGTTCATTttcgtttttagtttttccgGGTGAGGAGGCGACATTCACACTCCCTCCTTCCCCGTCACTCAGCAGACGCCTTCATCCAAAGTGACTTGCACGGTTCCTCAAACGCTGACGTGCCGTGTTCTTCAGATGCAACGTCACACCGAAGACAACATCGATGGACGGGGACAGGGGTAGCTGATGTGTTCCTTCCACGGataaattgtaatgtaatgtaattttggtGACGATTGAGTTGAATCCACgactgcatattttattttatattatttagttGTAAACTGTGGTAACAAAGGGGAGAGAGATTCTTGTGGCACCCTGAGTTGAATGGCTTCAAAGAGCCCTGCTGTATGAAAACGAACACTTTGGAAACTGAATTTCGGCCTCTTCTAGTCTCGTCCTCCAGGTATAGGCCTGTTAGGGTCATCTCCACTTTATGCTTAGGTGTCCTCCGTTTCCCAGGGGCTGTTCGTTTTGATACGGCAGGGCCCGTCTGATGTAAcccactgcatttacattttgatgaCCAGGGTGAAAAGAGCAGAGCAAAGACGATGACTGAAACAAAGCACATGAACAGATAAATCTGTTtgtcatctttgtttttttgttgtttttaagctgCTTAGCGGAGCATGGTTTGCTTCACAAGCCCAGATTCCATTTGGATTTAGCCAGAGATTTGCAAGCCGCCCagtcaaattattaaataaaaaaaaacaaaccaaccaaacaaacatcACCAAACTCCTCTAAAATTTCCTTTtctaataattattacaatccacataaaaataaacttatcAGGTCCGTGTAGCTTCCCTCGATCGTACTGACTGATTTAcgtgtgtacatatataatgtgtgtacatatattaaattaaatgtatttatagtcaGGTTTTCTTTAAATTGAGTGAGTGAACATCTGATTTGTAAATCtctaattttatatatatatatatatatatattatattatgaatCTTTAAGTGCACATACCTATCCACATTGTCTCTGTAGAGTCGCAGCTtatatttttaagctttttatCCGTGCAATAACTGACAGACAGAACGGCAATAGTTACATTTGAACACGCCTTATACCCTCTGGTCAGGTCCTCCCTTAGTTTTAGATTTACAGTCCGAATATGGTTTTAGAAAGAGACTCACCACTCCTGCTTATTGGGATTctttttgtttgcagttactaacttattaaactgttttgcaaaCTCTAAA

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14719 SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007170 True 3574 mRNA 0.50 10 5872776 5896585

Neighbor

gene id symbol gene type direction distance location
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding downstream 13509 5858851 ~ 5859267 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding downstream 30909 5826625 ~ 5841867 (-)
AMCG00007163 NA coding downstream 119805 5734674 ~ 5752971 (-)
AMCG00007162 NA coding downstream 179471 5692142 ~ 5693305 (-)
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding downstream 195207 5674177 ~ 5677569 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding upstream 184950 6081535 ~ 6088041 (-)
AMCG00007176 NA coding upstream 225117 6121702 ~ 6122376 (-)
AMCG00007177 NA coding upstream 460425 6357010 ~ 6372398 (-)
AMCG00007185 bbox1,LOC106587091,LOC106561934,LOC107682871 coding upstream 758828 6655413 ~ 6660262 (-)
AMCG00007184 NA coding upstream 779081 6675666 ~ 6676981 (-)
G21582 NA non-coding downstream 151234 5721263 ~ 5721542 (-)
G21550 NA non-coding downstream 310568 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 349099 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 354025 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 356805 5514986 ~ 5515971 (-)
G21646 NA non-coding upstream 18487 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 444194 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 622538 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 669632 6566217 ~ 6569739 (-)
G21786 NA non-coding upstream 738998 6635583 ~ 6638309 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 52492 5816809 ~ 5820284 (-)
G21429 NA other downstream 815370 5056787 ~ 5057406 (-)
G21426 NA other downstream 823256 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2372106 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 3209127 2644905 ~ 2663649 (-)
AMCG00007173 madd other upstream 111055 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1427839 7324424 ~ 7342341 (-)
G21942 NA other upstream 1602862 7499447 ~ 7506875 (-)
G22200 NA other upstream 2496611 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 3560903 9457488 ~ 9463337 (-)

Expression


Co-expression Network