AMCG00007177


Basic Information

Item Value
gene id AMCG00007177
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6357010 ~ 6372398 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007177
ATGCATCCCAGTCACTGCAGCGCACCCTCGAGTCGACATGACGAAGCGTGCCGCCCCGGCAGGGAGCGGTCCGGCCGGGGAACGGAGGAGAAGGACAGGTCGTGGCGAGTAATGTATCGGGTCAGTGCTGAGGCCGTCCTGCGCTACTGTGGTCTGGGAAAGACATACAACACGCCAGCGGTCTGTCAATTAGAGTTAGGAAGTTCCCAGCCCAACATCAGTCTGTTCCATCTCATCTCTGCGTTGCGTTCCCCCTTGCCTCTGTTGTCTTCCGGGCGCTGGGAAAGGGGCGTACAGGTGCAGCCCGTCCTGGGGAGGTTCAGCGAGTTGGCCGGCCTGCTATCCTCTCGGGGGCTGGAGCCCGGGAGCCTGGACGGGGTCCTGCTGGATGCGGGTTGCTCCTCCATGCAGTACCTTGACATGCCCACCGCTGCTGACGTGGTGAACGCTTTAGATCAACAGGCGCTTGCGTCCATCCTAAGCACATACGGGGAGGAGAAACACGCCAGGAAAATAGCTTCAGCGATCGCCGAGGCACGCAGCGTCTATCCCATCGCCAGAACACAGCAGCTTGCCAGCGTCGTCGCAGGTGCCTTCTCTTCCTCTGCGCTCTACGCCCGGAAGGACATGCTGCAGCGGCCGGCCCACATGGCCACCAAGACCTTCCAGGCGCTGCGCATCTTCGTGAACGACGAGCTGAACGAGCTGTATGCCGGCCTCCGCGCCGCAGAGTCCCTTCTGAAACCCGGGGGCCGCCTGGTGGTCCTCACGTTCCACTCCCTGGAAGACCGCATCGCCAAGCGGTTCCTTCACGGAACAGACGTGGCCGGGCCGCACTACCGCAGCATCCGGCAGAAGATTCGACAGGGCCGGGCGGAGAATGAGGACCGCAGGgtggaggaggacgaggaggaggaggaggaggacaagcCCCTGCAGAATGCCCAGTGGTGTCACCTGCAGAAGAAGGTCATGACTCCGCTCTCTGAAGACGTGTGGGAAAACCCCCGGGCGCGTTCGGCCAAACTGCGCGCGGCTCGGAAGCTGTGA

Function

GO: NA

KEGG:

id description
K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007177 True 1050 mRNA 0.63 5 6357010 6372398

Neighbor

gene id symbol gene type direction distance location
AMCG00007176 NA coding downstream 234634 6121702 ~ 6122376 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding downstream 268969 6081535 ~ 6088041 (-)
AMCG00007170 NA coding downstream 460425 5872776 ~ 5896585 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding downstream 497743 5858851 ~ 5859267 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding downstream 515143 5826625 ~ 5841867 (-)
AMCG00007185 bbox1,LOC106587091,LOC106561934,LOC107682871 coding upstream 283015 6655413 ~ 6660262 (-)
AMCG00007184 NA coding upstream 303268 6675666 ~ 6676981 (-)
AMCG00007188 fibin,LOC103373419,LOC104955317,LOC107740499,LOC107553104 coding upstream 317182 6689580 ~ 6690200 (-)
AMCG00007189 ano3 coding upstream 369299 6741697 ~ 6756583 (-)
AMCG00007190 NA coding upstream 391826 6764224 ~ 6778550 (-)
G21722 NA non-coding downstream 15839 6340779 ~ 6341171 (-)
G21646 NA non-coding downstream 368688 5915072 ~ 5988322 (-)
G21582 NA non-coding downstream 635468 5721263 ~ 5721542 (-)
G21550 NA non-coding downstream 794802 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 833333 5521615 ~ 5523677 (-)
G21739 NA non-coding upstream 146725 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 193819 6566217 ~ 6569739 (-)
G21786 NA non-coding upstream 263185 6635583 ~ 6638309 (-)
G21787 NA non-coding upstream 266599 6638997 ~ 6644878 (-)
G21803 NA non-coding upstream 315086 6687484 ~ 6689109 (-)
AMCG00007173 madd other downstream 302946 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 536726 5816809 ~ 5820284 (-)
G21429 NA other downstream 1299604 5056787 ~ 5057406 (-)
G21426 NA other downstream 1307490 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2856340 3476068 ~ 3500670 (-)
AMCG00007201 NA other upstream 952026 7324424 ~ 7342341 (-)
G21942 NA other upstream 1127049 7499447 ~ 7506875 (-)
G22200 NA other upstream 2020798 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 3085090 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 3587664 9960062 ~ 10001165 (-)

Expression


Co-expression Network