AMCG00007185 (bbox1,LOC106587091,LOC106561934,LOC107682871)


Basic Information

Item Value
gene id AMCG00007185
gene name bbox1,LOC106587091,LOC106561934,LOC107682871
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6655413 ~ 6660262 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007185
ATGCCTGAATTATCTGCTTTTAACATCCCGCTGCTGGAATTGAGCCCATTCTCATTGCAGGAGTCTGGGATTCGTTTGCTCCCAAACCGGCACTACTGGGGCTCCGAGCTGCAGATTCCTACCGCCAGCTTCGAGGAGGTGCTGACGGACGACAAGGCTGCCTATGCCTGGCTGGCCGCCCTGCGCAGGGTGGGCATCGTGTACTTGAAGGGGGCCCCTGTGGAGCAGGGCCAGGTGGCCCGGCTGAGCGAGAGGATCGGCTATCTGCGGCTCACTTTCTACGGACACACCTGGCAGGTGCAGGACAAGGCCGATGCCAACAACGTGGCCTACACCTCCGGGAAGCTGAGCCTCCACACCGACTACCCCGCCCTGCACTACCCCCCCGGGGTCCAGTTCCTGCACTGCATCAGGCAGGCCCAGGCGGGCGGAGAGAGCGAGGTGGTGGATGGGTTCCACGCCGCCAACCGCCTGAGGGCTGAGAACCCGGAGGCCTTCCGCATCCTGACCTCACTGCGGGTCGACTTCACCGACACCGGCGCCGACTACTGCGACTTCAGCGTGCAGTCCAAGAACCGCATCATCGAtgtTGACTGTGACGGCCAGGTCGTCCGGATCAACTACAACAACGCGACGCGCGACTCGGTTCTGGACGTGCCTCTGGACCAGGTCCAGCCCTTCTACTCGGCGCTGAAGGCCTTCGTGGAGCTCATGTGCCGCCCGGAGAGCACGGTCACTTACCACATGAAGCCAGGCGACGTGGTGACCTTCGATAACTGGAGGTTGCTCCACGGCCGCCGCAGCTACGTCTCGGGTCCCGGCGACAAGAGGCACCTGGAGGGGGCATACCTGGATTGGGACGAGGTGATGTCCCGCCTGCGGATCCTGGAAAGAGCCATCCGCGGGGAGAGCTAG

Function

symbol description
bbox1 Predicted to enable gamma-butyrobetaine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in male organism. Orthologous to human BBOX1 (gamma-butyrobetaine hydroxylase 1).

NR:

description
PREDICTED: gamma-butyrobetaine dioxygenase isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00471 BBOX1; gamma-butyrobetaine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007185 True 915 mRNA 0.63 6 6655413 6660262

Neighbor

gene id symbol gene type direction distance location
AMCG00007177 NA coding downstream 283015 6357010 ~ 6372398 (-)
AMCG00007176 NA coding downstream 533037 6121702 ~ 6122376 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding downstream 567372 6081535 ~ 6088041 (-)
AMCG00007170 NA coding downstream 758828 5872776 ~ 5896585 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding downstream 796146 5858851 ~ 5859267 (-)
AMCG00007184 NA coding upstream 15404 6675666 ~ 6676981 (-)
AMCG00007188 fibin,LOC103373419,LOC104955317,LOC107740499,LOC107553104 coding upstream 29318 6689580 ~ 6690200 (-)
AMCG00007189 ano3 coding upstream 81435 6741697 ~ 6756583 (-)
AMCG00007190 NA coding upstream 103962 6764224 ~ 6778550 (-)
AMCG00007191 NA coding upstream 267338 6927600 ~ 6943044 (-)
G21787 NA non-coding downstream 10535 6638997 ~ 6644878 (-)
G21786 NA non-coding downstream 17104 6635583 ~ 6638309 (-)
G21756 NA non-coding downstream 85674 6566217 ~ 6569739 (-)
G21739 NA non-coding downstream 135677 6519123 ~ 6519736 (-)
G21722 NA non-coding downstream 314242 6340779 ~ 6341171 (-)
G21803 NA non-coding upstream 27222 6687484 ~ 6689109 (-)
G21807 NA non-coding upstream 44147 6704409 ~ 6704662 (-)
G22057 NA non-coding upstream 1093152 7753414 ~ 7753697 (-)
G22077 NA non-coding upstream 1240540 7900802 ~ 7901175 (-)
G22111 NA non-coding upstream 1253342 7913604 ~ 7984510 (-)
AMCG00007173 madd other downstream 601349 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 835129 5816809 ~ 5820284 (-)
G21429 NA other downstream 1598007 5056787 ~ 5057406 (-)
G21426 NA other downstream 1605893 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 3154743 3476068 ~ 3500670 (-)
AMCG00007201 NA other upstream 664162 7324424 ~ 7342341 (-)
G21942 NA other upstream 839185 7499447 ~ 7506875 (-)
G22200 NA other upstream 1732934 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 2797226 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 3299800 9960062 ~ 10001165 (-)

Expression


Co-expression Network