Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00007214 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 7584786 ~ 7591300 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0042427 | serotonin biosynthetic process | biological_process |
| GO:0009072 | aromatic amino acid family metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0004510 | tryptophan 5-monooxygenase activity | molecular_function |
| GO:0016597 | amino acid binding | molecular_function |
| id | description |
|---|---|
| K00502 | TPH1_2; tryptophan 5-monooxygenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00007214 | True | 1257 | mRNA | 0.61 | 11 | 7584786 | 7591300 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00007210 | NA | coding | downstream | 3890 | 7573302 ~ 7580896 (-) |
| AMCG00007211 | NA | coding | downstream | 23335 | 7560710 ~ 7561451 (-) |
| AMCG00007204 | NA | coding | downstream | 116635 | 7460325 ~ 7468151 (-) |
| AMCG00007207 | NA | coding | downstream | 155766 | 7428719 ~ 7429020 (-) |
| AMCG00007205 | NA | coding | downstream | 161584 | 7408648 ~ 7423202 (-) |
| AMCG00007213 | NA | coding | upstream | 15283 | 7606583 ~ 7614412 (-) |
| AMCG00007212 | hps5 | coding | upstream | 23856 | 7615156 ~ 7630176 (-) |
| AMCG00007215 | LOC107551386,LOC107735837 | coding | upstream | 41318 | 7632618 ~ 7639904 (-) |
| AMCG00007222 | LOC108433033,LOC107740331 | coding | upstream | 123904 | 7715204 ~ 7729044 (-) |
| AMCG00007221 | NA | coding | upstream | 153236 | 7744536 ~ 7747445 (-) |
| G21807 | NA | non-coding | downstream | 880124 | 6704409 ~ 6704662 (-) |
| G21803 | NA | non-coding | downstream | 895677 | 6687484 ~ 6689109 (-) |
| G21787 | NA | non-coding | downstream | 939908 | 6638997 ~ 6644878 (-) |
| G21786 | NA | non-coding | downstream | 946477 | 6635583 ~ 6638309 (-) |
| G21756 | NA | non-coding | downstream | 1015047 | 6566217 ~ 6569739 (-) |
| G22057 | NA | non-coding | upstream | 162114 | 7753414 ~ 7753697 (-) |
| G22077 | NA | non-coding | upstream | 309502 | 7900802 ~ 7901175 (-) |
| G22111 | NA | non-coding | upstream | 322304 | 7913604 ~ 7984510 (-) |
| G22191 | NA | non-coding | upstream | 660727 | 8252027 ~ 8252664 (-) |
| G22193 | NA | non-coding | upstream | 662593 | 8253893 ~ 8254667 (-) |
| G21942 | NA | other | downstream | 77911 | 7499447 ~ 7506875 (-) |
| AMCG00007201 | NA | other | downstream | 242445 | 7324424 ~ 7342341 (-) |
| AMCG00007173 | madd | other | downstream | 1530722 | 6007640 ~ 6054064 (-) |
| G21632 | psmc3,prs6a,LOC107758446 | other | downstream | 1764502 | 5816809 ~ 5820284 (-) |
| G21429 | NA | other | downstream | 2527380 | 5056787 ~ 5057406 (-) |
| G22200 | NA | other | upstream | 801896 | 8393196 ~ 8396224 (-) |
| AMCG00007267 | NA | other | upstream | 1866188 | 9457488 ~ 9463337 (-) |
| AMCG00007282 | NA | other | upstream | 2368762 | 9960062 ~ 10001165 (-) |
| AMCG00007299 | NA | other | upstream | 2561180 | 10152480 ~ 10246746 (-) |
| AMCG00007289 | bet1l,LOC107740886 | other | upstream | 2596008 | 10187308 ~ 10190204 (-) |
