AMCG00007215 (LOC107551386,LOC107735837)


Basic Information

Item Value
gene id AMCG00007215
gene name LOC107551386,LOC107735837
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7632618 ~ 7639904 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007215
ATGGAGGAGCTGGGCTTGGGGATGGCGTCCTCAGAGGAGGTGCTGCTGGTGGTGAAGCGCGTGCGGCAGAAGAAGCAGGACGGGACTCTGTACCTGATGGCGGAGAGGGTCGCCTGGGGGCCGGAGGGCAAGGACCGCTTCTCCGTCAGCCACCCCTACTCCGACATCCGCTGTCAGAAGATTAGCCCCGACGGGAAGGCGAAGGAGGACCCAGTGCTGTTCCAGCTGTACAAGGACCTGGTGGTCAGTCAGGTGATCAGCGCAGAGGAGTTCTGGGCCAATCGGCTCAGCCTGAACGCGGCTGACCATGCCCCCTCCAACAGCAAGCAGGAAGTGGGCATCTCTGCAGCGTTCCTGGCGGACGTTCGCCCGCAGACGGACGGCTGCAATGGCCTGCGCTATAACCTCACCTCTGACCTCATCGAGTCCATATTCCGCACCTACCCAGCAGTCAAGCAGAAGTACGCCGAGAACGTCCCGCACAACCTCACAGAGAAGGACTTCTGGACCCGGTTCTTCCAGTCCCACTATTTCCACCGGGACCGGATCAGCACCGGCTCGCAGGACCTGTTCTCCGAATGTGCCAAGCAGGACGAGAGAGGTGAGGCCGGGTCAGGGACGGGGAGCCAGAACCGGGCTGTTGACGTGCTGAATGACCAGGCCAGTGAGACCAGCAGCACTGATGGGAACTCCAGAGACTCAGACTTCTTCCAGCCGCCAGTCAAGAAGgTCCtgtccagcagcacagccagcaCTGCCATCGCTGCCCTGTCCCCTGGGGGGGTGGTGAAGATGAGGAGCAACCTGGAGAGGTTCCAGGGGACCAAGCTGCGCCCGTTTCAGGACAAAGTGCACCGGCAGTACTTCAGTACGAATCTGACCGCTCACCTGGAGGAGATGCTGCAGACGGCGTACAACAAGTTTCACGGCTGGCAGACTCGCCGCATGATGAGGAAGacctgagagaggaggaggaggaggagagagagagaggagagacggactacaggaggaagaggagggacaTGGAGACGCAACTCCTGACGCgtgggaaggaaggaagattTTGCCACAGCTGCTGTGTCAGGAAAAACAGACCCTCTCGGTTTTAAATTCCTGGGAACAAGAGATTTTTAGGAGTGTCgggatggagagatggagggatgaAGAGATGATGGGTGTCACAAGTCGACACAGATCTGCAGAGGTGGACAGGAAACCCGCCAgcgtttatttgttgtttgtttttcttttctttttaatttatattctcTTCAGTTCTGATGTTTTCTCTTCCCTGAGGTTTGCACACAAATATAGACACTGAGAgtgagaaggagggagggaaggagagagagggaaggaaggagggaggtttttttctgtctctcctaGAGATTACAAAAgttataattatacaaaacacaattataaatgtttctttgttttgtttcatttttgttttttaaataaataaataaataaataaagaacgtGCTGTAAAGGAC

Function

NR:

description
PREDICTED: general transcription factor IIH subunit 1-like, partial

GO: NA

KEGG:

id description
K03141 TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007215 True 1508 mRNA 0.54 10 7632618 7639904

Neighbor

gene id symbol gene type direction distance location
AMCG00007212 hps5 coding downstream 2442 7615156 ~ 7630176 (-)
AMCG00007213 NA coding downstream 18206 7606583 ~ 7614412 (-)
AMCG00007214 NA coding downstream 41318 7584786 ~ 7591300 (-)
AMCG00007210 NA coding downstream 51722 7573302 ~ 7580896 (-)
AMCG00007211 NA coding downstream 71167 7560710 ~ 7561451 (-)
AMCG00007222 LOC108433033,LOC107740331 coding upstream 75300 7715204 ~ 7729044 (-)
AMCG00007221 NA coding upstream 104632 7744536 ~ 7747445 (-)
AMCG00007229 swap70,swap70b,LOC107686252,LOC107569662,LOC107756911,LOC108423449,LOC107740330,LOC108264467 coding upstream 262269 7902173 ~ 7927369 (-)
AMCG00007227 wee1,LOC107758614,LOC106587548,LOC107583885,LOC107580369 coding upstream 288602 7928506 ~ 7934299 (-)
AMCG00007228 NA coding upstream 296358 7936262 ~ 7946941 (-)
G21807 NA non-coding downstream 927956 6704409 ~ 6704662 (-)
G21803 NA non-coding downstream 943509 6687484 ~ 6689109 (-)
G21787 NA non-coding downstream 987740 6638997 ~ 6644878 (-)
G21786 NA non-coding downstream 994309 6635583 ~ 6638309 (-)
G21756 NA non-coding downstream 1062879 6566217 ~ 6569739 (-)
G22057 NA non-coding upstream 113510 7753414 ~ 7753697 (-)
G22077 NA non-coding upstream 260898 7900802 ~ 7901175 (-)
G22111 NA non-coding upstream 273700 7913604 ~ 7984510 (-)
G22191 NA non-coding upstream 612123 8252027 ~ 8252664 (-)
G22193 NA non-coding upstream 613989 8253893 ~ 8254667 (-)
G21942 NA other downstream 125743 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 290277 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 1578554 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 1812334 5816809 ~ 5820284 (-)
G21429 NA other downstream 2575212 5056787 ~ 5057406 (-)
G22200 NA other upstream 753292 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 1817584 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 2320158 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 2512576 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 2547404 10187308 ~ 10190204 (-)

Expression


Co-expression Network