AMCG00007226 (ipo7,LOC106587545,LOC106562356)


Basic Information

Item Value
gene id AMCG00007226
gene name ipo7,LOC106587545,LOC106562356
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7947714 ~ 7971575 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007226
GCGCCGGCAGCTGAAGAACAGCGCGTCCATGTGCGCATCGACTGGGGCTTCATAGTTCACAGAACCCACCGAAACCGAGCCATATCCGAACCTAGACATGGATCCCAACTCTCTGATCGAGGCCCTCCGGGGGACCATGGACCCCAATTTGCGGGAGGCCGCCGAAAGACAGCTGAGTGAGGGTCACAGCCAGGTGAACTTCGTCTCCACCCTGCTTCAGGTGACCATGTCTGAACAGCTGGATCTGCCAGTCAGGCAAGCAGGTGTGATCTACTTGAAGAACATGGTGACCCAGTACTGGAACGAGGGGGAAGGCACTAGTGGAGAGGCTTTGCCCACCACCATCCCAGAAGAGGACCGCCAGTTTATCCGAGACAACATCGTGGAGGCAATCATACACTCTCCGGAGCGCATAAGAGTACAACTCACGACTTGCATTCATCACATGATCAAGCACGACTACCCCGGCAAATGGACTGCAATCGTGGATAAGATTGGCTTCTACCTTCAGTCGGATAACAGCGCCGGCTGGCTGGGAATCCTCCTGTGTCTCTATCAGCTTGTGAAGAACTATGAGTACAAGAAACCAGACGAGCGCAGCCCATTGGTGGCAGCGATGCAGATCTTCATGCCTATGCTGAAGGATCGCTTTATCCAGCTCCTCCAAGACCCCTCCAGCCAGTCTGTGCTCATCCAGAAACAGATCTTCAAGATCCTGTATGCACTTTTCCAGTACAACCTGCCATTGGAGTTGATCAATCAGCAGAACCTGACCGAGTGGATGGAGATCTTGAAGCAAGTGGTGGACCGAGATGTGCCAGCAGAGACCCTGCAGGTGGATGAGGACGAGCGGCCGGAGCTGCCCTGGTGGAAGTGCAAGAAGTATGGCAGCCCCGGCAACATCTCCAAAGAGTACACAGAGTTCGCGGAGCTGTTCCTCAAGGGCTACGCAGTCTCTGCTCAGCAGGTGTTATTGAAGGTCTTGTATCAGTATAAAGAAAAGCACTATGTAGCTCCCAGAGTACTGCAGCAGACGCTCAACTATATCAACCAGGGGGTGGCACACGCACTTACGTGGAAGAACCTCAAACCGCATATCCAGGGCATCATTCAGGATGTGGTCTTTCCACTGATGTGTTACACAGACACTGACGAGGAGCTCTGGCAAGAAGATCCTTACGAGTACATTCGCATGAAGTTCGACGTGTTTGAAGATTTCATCTCCCCGACGACAGCTGCACAAACTCTGCTCTTCACTGCATGTAGTAAGAGAAAAGAAATCCTCACGGACCCCGCAGCTGACCCACGCAAGAAGGATGGGGCCCTGCATATGATCGGGTCCTTGGCTGAGGTTTTATTGAAGAAAAAGATCTACAAAGACCAGATGGAGTTCATGCTACAGAACCATGTCTTCCCGCTGTTCAGCAGTGAGCTGGGCTACATGAGAGCCAGGGCCTGCTGGGTTCTCCATTATTTCTGTGAGGTGAAATTTAAGATTGACCAGAACCTACAGACAGCCCTGGAGCTCACGAGACGCTGTCTGATCAATGACAATGAAATGCCAGTGAAAGTTGAGGCTGCCATTGCCCTACAAGTTCTCATCAGCAACCAGGAGAAAGCTAAAGAGTACATCACTCCCTTCATCAGACCAGTAATGCAGGCGCTCCTGCACATTGTGCGAGAGACTGAGAACGATGACCTCACCAACGTCATCCAGAAGATGATCTGCGAGTACAGTGAGGAGGTCACGCCCATCGCTGTGGAGATGACCCAGCACTTGGCGATGACATTCAACCAGGTGATCCAGACGGGTCCAGATGAGGAGGGCGGTGACGACAAGGCTGTGACAGCCATGGGCATCCTCAACACCATCGACACCCTGCTCAGTGTGGTGGAGGACCACAAAGAGATCACCCAGCAATTGGAAGGAATCTGTCTGCAGGTCATCGGGACCGTGTTACAGCAGCACGTTTTGGagtTCTATGAGGAGATCCTCTCTCTGGCCCATAGTTTGACGTGTCAACAGGTATCCCCGCAGATGTGGCAGCTCTTACCGCTGGTCTTCGAGGTCTTCCAGCAGGATGGGTTTGACTACTTCACAGATATGATGCCTCTGTTACATAACTACATCACAGTcgacacagacacactactGTCTGACACCAAATACCTTGAAATGATCTACAGCATGTGCAAAAAGGTCCTGACAGGAGATGCGGGCGAGGATGCCGAGTGCCACGCAGCTAAGCTATTGGAAGTCGTCATTCTGCAGTGCAAAGGGCGCGGCATTGACCAGGTGGTGCCCTTGTTCGTGGCAGCGGCCCTGGAGAGGCTGACGAGGGAGGTGAAGACGAGTGAGCTGAGGACCATGTGTCTGCAGGTGGCCATCGCTGGGCTGTACTACAGCCCCCCACTGCTGCTCAACACGCTGGAGAACCTGCGCTTCCCCAACAACACGGAGCCCATCACCAACCACTTTATCACGCAGTGGCTCAATGACGTTGACTGCTTCCTCGGGCTCCACGACAGGAAGATGTGTGTGCTGGGTCTGTGCGCGCTGATTGACATGGAACAGAGGCCGCAGGTGGTCAACCAGGTGGCCGGCCAGCTGATCCCAGCAGCCATCCTGCTCTTCAACGGGCTGAAGAGGGCGTACGCCTGCCGGGCCGAGCACGAGAACGACGAGGACGACGACGAGGACGGGGAGGACGAAGAGGAGAACGAAGAGCTGGGCAGTGACGAGGATGATATCGATGAAGAAGGGCAGGAATACCTGGAGATGCTGGCCAAGCAGGCGGGGGAGGATGGCGACGACGAGGACTGGGAGGAGGATGACGCTGAGGAGACGGCCCTTGAGGGGTACACCACAGCTGTGGACGATGAGGACAACCCTGTGGACGAGTACCAGATCTTCAAAGTCATCCTACAGAatCTTCAGAATCGGGACCCAGCATGGTACcaggcactcacacacacactcgatGAGGAACAAGGAAAGCAACTCCAAGACATCGCCACTCTGGCAGATCAAAGACGGGCAGCCCATGAGTCAAAAATGATCGAGAAACACGGCGGATACAAGTTCACAGCTCCAGTGGTGCCAACCAACTTCAATTTTGGGGGCAATGCTCCGGGAATGAATTGAATCTTCCCTTCCTTTCCTTACTCTGTGACTGATTGTAGTGAAAAGCTTGTGTTGTTCCCTCACGTAGTGGTTCCAGAACTGGGTCTTCTCACTCACTCTTCAATTTGACTGTACTGAATTGGACATAGCACCAGAAGATGTGGGAAGGCAACCAAATGCGACCTATGGCTGGGAAAACTAACCAAGAACTTGgaacttgaaaaacaaaataaaataaaaaaagaaaaaaatcaagctCTGAACAGCATTCTTATGGAGTCCTGGAGGGGATGTCATGAcggcagctttttttttttcttcaacaaaAATTATGGggattcaaaaaaaaaaagaaatcaatgaCAATATGACTAAACGTCTCATCAGTTTCACAGTATAGGCTAGAAGGCCACTCTTTAAATTATACCTGTGGCAGTAGTGTTTGTCTAGATTTTTGCATTAACAAATTCCcatgtttgtaatgtatataaGCCAAGGTACTATATAAGCCTTGCAGAATAACCTTAGGCATTTGAAAGGCGTAAGCGAGTGTATTCATATGTAGCATATTGGATACTTGTCATAGCACTACGTGATGCCTGATATCTGTAAATTAACTAGCACTTTCATATTCAGGTCTCCTAGCCTTCTGTATCAGACTGCAAATTTGTAAAATCAAtggagaatatttaaaaataagaaaatggatCTGTAACTTTGTTACTCAGCAAGCAACTTAACTGATCTGGTTACAGCTGGTTGTCACATGAATTTGGTTACTGTTGAATAAtcagtggcattttgttgctgcTAAAAATGGCAACTtctggggttttgtttttctttttttatgacaaaaaaaacagctcttGGTGTTCAATTTGGATACAAGACATTTGTGTTGTACGCACTGAAAGTATGATGAATACTTCATTGAAGCATGTACAATTGGACTTCGCATATAAGCTCTTATTTTGAGTTAAATGAATCTCAAGCATCCGGTTGATGTATGGATGAACAATCTATATATacagcaaaatattaaaaactaaaattgggTTACATGTCAcagtttttacttttcaaaaaaGTATGGTTCTTTCAGATCAATAGCTCCTCTGAACGGAGAGTAGAGGCTTTCAGGTTAGCATCTGAACTTGTCATTCATACCTTTAACTAAGGTAAAACCAACAGTTCCAAGACACGTGTGGGTGCATACAGCAGTGTTTAATATATGATTAAGTAGTAAAGTAGGGTCTGAATCTGGTCTTCTGAAACATGATTTTATTGTAGttgcaatgtttttacattgcttgcaagaaaagaaagaaaacaagtgcacatacatacaaactgGTATTCCAATtaagttaatacatttgtaaaacttGCAATTGAATGTGTTCCAAGTAAACTCAAAATAGccttgttttatataaattaaggTGAACATAAATTTAATCGAGAGAAGTTAACTCTTTGGCAGATTGTAGAATAATATCCTACTTATCTGGGCTACGTCTAGTTGTGATCAGTACCATTTACACAAATGATGGAGGGATATGAAGGTTCCAAACCCTTGAAAATGTGGATTTTACATGTTAGCTAgcatttttaatgcaataaaataagcTATTTTTTGTATCCTCTTGCTGTGGGTAGTTATACACAACTTGGTGTTTGAAAGTTTTTCAGCAAGTTCTAGATAACATTTCCCCCTTACATTCAGTGCATTTTTAAAGGCTGATGCCTGTCATTTAAGAtactttaaaaactatttaagaGATTGACAGATGTTCAAAGTACACTGACCCTTGTAGATACCAATAAGTCACTTTACTTACAGTGGCAGCAAGAAGTTGAAATGTGTCACATTTTGTCAAAGGCTAATGGTTGCCTTtcctgaagtaaaaaaaaaacaatgaaaatccCTGTTCACTAAATTTGGTCAAAGGCTAATGGTTGCCTTTCCTGAAGTCAAACAATTCCGGTAcacaatttgattaatttggGTTTGCCCCAAATTGTGTGAAACTTTTACAATGAGAAAGTAACAATCAAAACTTTAAATCCAGGTAGGTCTGTTGACattaacaaatgtaatgtgCTTGAATATTGCAGTGTTTAATACTCAAAATGTTCAGTCccaggttgttgttttatttttttttctttatcttgaAGGGGAGGGTGATGCTGATCTTCATATCTTAAATTTGTTTACATGGCTAATGTATGTAGATATGCACAAGCATGTCATTTTATGTGCAATTCActctaaatattattttacatgaattaAACTTTTGTAGGCTCTCTGAAACCTCTTACATTGACCATTTGTGTGTGACCTGATACATAGTACCAAAATAGAAATAATCTAACCTAGGCCTGCAAAAACATACGTCCTTTCTCTTGCTAAACAAACTGTAATGTTATAATATTGTAGATAATCcaatatttcagtttgaaattaatcatttaaagattGTGTGATTAATACAACAATATAGAACACTTacacttttttcatttattattagatCTTTACAATTAAGACACGTTCACGGATGATATGTACATGTTTGTGCTTTGAATTACGCCAAATGTATT

Function

symbol description
ipo7 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and nuclear envelope. Orthologous to human IPO7 (importin 7).

NR:

description
PREDICTED: importin-7

GO: NA

KEGG:

id description
K20223 IPO7, RANBP7; importin-7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007226 True 5737 mRNA 0.45 25 7947714 7971575

Neighbor

gene id symbol gene type direction distance location
AMCG00007228 NA coding downstream 773 7936262 ~ 7946941 (-)
AMCG00007227 wee1,LOC107758614,LOC106587548,LOC107583885,LOC107580369 coding downstream 13415 7928506 ~ 7934299 (-)
AMCG00007229 swap70,swap70b,LOC107686252,LOC107569662,LOC107756911,LOC108423449,LOC107740330,LOC108264467 coding downstream 20345 7902173 ~ 7927369 (-)
AMCG00007221 NA coding downstream 200269 7744536 ~ 7747445 (-)
AMCG00007222 LOC108433033,LOC107740331 coding downstream 218670 7715204 ~ 7729044 (-)
AMCG00007238 NA coding upstream 131913 8103488 ~ 8104939 (-)
AMCG00007239 rpl27a,LOC107687759 coding upstream 208983 8180558 ~ 8183186 (-)
AMCG00007240 tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678 coding upstream 471752 8443327 ~ 8466794 (-)
AMCG00007246 rras2,LOC106676223 coding upstream 580522 8552097 ~ 8560440 (-)
AMCG00007247 copb1 coding upstream 631903 8603478 ~ 8617299 (-)
G22077 NA non-coding downstream 46539 7900802 ~ 7901175 (-)
G22057 NA non-coding downstream 194017 7753414 ~ 7753697 (-)
G21807 NA non-coding downstream 1243052 6704409 ~ 6704662 (-)
G21803 NA non-coding downstream 1258605 6687484 ~ 6689109 (-)
G21787 NA non-coding downstream 1302836 6638997 ~ 6644878 (-)
G22191 NA non-coding upstream 280452 8252027 ~ 8252664 (-)
G22193 NA non-coding upstream 282318 8253893 ~ 8254667 (-)
G22217 NA non-coding upstream 468277 8439852 ~ 8443144 (-)
G22249 NA non-coding upstream 718623 8690198 ~ 8690751 (-)
G22298 NA non-coding upstream 1004542 8976117 ~ 8980818 (-)
G21942 NA other downstream 440839 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 605373 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 1893650 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2127430 5816809 ~ 5820284 (-)
G21429 NA other downstream 2890308 5056787 ~ 5057406 (-)
G22200 NA other upstream 421621 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 1485913 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 1988487 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 2180905 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 2215733 10187308 ~ 10190204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000043_05025912_05042461 IPO7 coding CI01000043 null 5025912 ~ 5042676 (+)