AMCG00007229 (swap70,swap70b,LOC107686252,LOC107569662,LOC107756911,LOC108423449,LOC107740330,LOC108264467)


Basic Information

Item Value
gene id AMCG00007229
gene name swap70,swap70b,LOC107686252,LOC107569662,LOC107756911,LOC108423449,LOC107740330,LOC108264467
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7902173 ~ 7927369 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007229
AAAACAGAAACTTTGAGCGACGGACGCGCACTGTGACACAGCTCGGCAAATAACGCCTAAAATGGGACTGAGGGACGAGCTATTAAAGTCTATCTGGCACGCTTTTACAGCTCTGGATGTGGACAAAAGTGGGAAAGTATCTAAATCCCAGCTGAAGgtTCTGTCTCACAACCTGTGCACTGTGATGAAAATCCCCCATGACCCTGTGGCGCTGGAGGAGCACTTTAAGGACGACGACGAAGGCCCGGTCTCCAACCAGGGATACATGCCCTACCTGAATAAGTTCATCCTGGACAAGGTTCAAGACAACTTTGACCGTGTGGATTTCAACAGGATGTGCTGGACACTGTGCGCCAGGAAAAACCTCACCAAAATGTATCTGCTCATCACAGACGACGACTCCTTCAAGATCTGGTGCATTTTCAACTTCCTGTCCGAAGACAGGTACCCTCTGGCCATTGTTACTGAAGAGATTGAGTACTTCCTGAGAAAGCTCACCGAGGCCATGGGCGGGAGCTGGATCGAGGagaagtttgaggattataagaTTCAGCTGAACAGCAAGAAGCAGtgcctgtctgcctgggagCTGATCGACCTCATTGGCACAGGGCACTTCAGTAAGGGCATGGACCGGCAAACCCTCTCCATGGGCATCAACGAGGTCTTCCAGGAGCTCATCCTGGACGTGCTCAAACAAGGCTACATGCTGAAGAAAGGGCACAAGAGGAAAAACTGGACAGAGCGGTGGTTTCTCCTGCGGCCCAATGCCATTTCATACTATGTGAGTGAAGATTTGACGGAGAAGAAAGGCGATATAGTACTGGATGGCAACTGCTGTGTTGAGAAACTGGAAGAAGCAGCAGCCAACTctgcggaggaggaggagaggagactGCAGACTCACAGAGAGCTCCAGGACCGCTACAGAATggacctggagagagagaaaatgGTGCGGCAAcagatggaggaggaggtggcTCAAAAGTCCGTTGAGGTGGAGCAGTATCTGCAGAGGGTGAACGAGCTGGAGGACATGTACCGGCTACTGGAGGAGGCCCTGGAGGACGAGAGGCAGGCCAGGCAAGACGAGGAGACAGTCCGCAAACTGCAGGCCAGGCTGCTCGAGGAGGAGGCCATGAAGCGGGTGGAGCTGGAGAACATCCACCTCCAGCAGCAGAGGGCCATCTCCCAGACGGAGGCGGAgaagcaggagctggagaacGAGCGGCTGGCCAAGGAGCAGGCCCTGCAGGCCGCCATGCAGCAGCTGGAGCTGCTGGAGAGTGAGCGCAGGGGGGCTCTGGAGCAGTATGAGGAGGTGATGAAGAAACTGGAACAGGCGGCCAGTAAGACCAAGAGTTGGAAGGACAAAGTAGCTCATCACGAGGGGCTGATTCGCTTAATTCAGCCAGGCTCAAAGGGACCACAGCTGATCACTAACTGGGGTGCGGCAGCCTTCACCGAGGCCGAGCTGAACCTGCGAGAGAAGAACTGGCAGGAGAAGAAGAACCGAGCCGCTCCAGCCCAGTAGAGCGCACTGACGTCCAGAGAGGAGAGTCCGTGTCTGGCTGAGTAACTGGGCCGCGGCCTTGTGTTCGGACAGCCCGGCTTCACACAGATGTTGAGTTCTGGAACATTCCATACTACACTGCAGCTGCTAGTGCAGAACAAGAGCACAATCACATATGAAGGGAACACGAAGTAGAAACTTTTCCTCTTTCTTAGGAAAATTGCTCCTAGTGACCTAGCCTGTTACTTTTCtatcactttatttaaatgtgtgtgccTTCCAGTCTCAAgatgattatttgtattgtaattgcaACAGAGATTCTTAAATTCCCTCCATACATCACACTGATTAAGACTACTTTATTTACATGTTGTAAATATCCATAGTACAAGTCTTCCCCTAAAGTGTTTTTGTTAACCCATTGGTATTAAAtgattttttattgatttaatttgacacAGGGAAAATAATTTCTCCACACTCTTGCGCTTTTGTGTAGGATGTAGTGCAGCATTACAGCAATGCTaatatgtcatttgtttttgtttctgctgttacaaagattttttgttttggatgcTTGTATAACAAAAGCTGCGATCTTTCAAAGTTTTTCAGCCTCTCTCTAATGATTGTGTTACTACTACTGAAGATGGCAAGAATGGATTCACTGCTTGTGAAATTTCTTTCAAAACAATCTTATATTAACCAAAAGAcattaagaggaaaaaaaacttggAGAAATAGCAATTTTGTTTAGGTTTTACCTGGGACTTTTCCATATAAAACCCAAAAGGAGCTTTTGTACATGTGATTGTAGAGGAAGTCCtttattaaatatagatatttcATTTAAGGAATGCATCAATGTGCTTTTCCATTGCTGTTAAATAG

Function

symbol description
swap70b Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension; positive regulation of oligodendrocyte differentiation; and regulation of exit from mitosis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; pectoral fin; and vasculature. Orthologous to human SWAP70 (switching B cell complex subunit SWAP70).
swap70 Enables cadherin binding activity. Predicted to be involved in regulation of actin polymerization or depolymerization. Predicted to act upstream of or within isotype switching. Located in actin cytoskeleton; cytoplasm; and plasma membrane.

NR:

description
PREDICTED: switch-associated protein 70-like

GO:

id name namespace
GO:0007096 regulation of exit from mitosis biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007229 True 2413 mRNA 0.48 10 7902173 7927369

Neighbor

gene id symbol gene type direction distance location
AMCG00007221 NA coding downstream 154728 7744536 ~ 7747445 (-)
AMCG00007222 LOC108433033,LOC107740331 coding downstream 173129 7715204 ~ 7729044 (-)
AMCG00007215 LOC107551386,LOC107735837 coding downstream 262269 7632618 ~ 7639904 (-)
AMCG00007212 hps5 coding downstream 271997 7615156 ~ 7630176 (-)
AMCG00007213 NA coding downstream 287761 7606583 ~ 7614412 (-)
AMCG00007227 wee1,LOC107758614,LOC106587548,LOC107583885,LOC107580369 coding upstream 1137 7928506 ~ 7934299 (-)
AMCG00007228 NA coding upstream 8893 7936262 ~ 7946941 (-)
AMCG00007226 ipo7,LOC106587545,LOC106562356 coding upstream 20345 7947714 ~ 7971575 (-)
AMCG00007238 NA coding upstream 176119 8103488 ~ 8104939 (-)
AMCG00007239 rpl27a,LOC107687759 coding upstream 253189 8180558 ~ 8183186 (-)
G22077 NA non-coding downstream 998 7900802 ~ 7901175 (-)
G22057 NA non-coding downstream 148476 7753414 ~ 7753697 (-)
G21807 NA non-coding downstream 1197511 6704409 ~ 6704662 (-)
G21803 NA non-coding downstream 1213064 6687484 ~ 6689109 (-)
G21787 NA non-coding downstream 1257295 6638997 ~ 6644878 (-)
G22191 NA non-coding upstream 324658 8252027 ~ 8252664 (-)
G22193 NA non-coding upstream 326524 8253893 ~ 8254667 (-)
G22217 NA non-coding upstream 512483 8439852 ~ 8443144 (-)
G22249 NA non-coding upstream 762829 8690198 ~ 8690751 (-)
G22298 NA non-coding upstream 1048748 8976117 ~ 8980818 (-)
G21942 NA other downstream 395298 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 559832 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 1848109 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2081889 5816809 ~ 5820284 (-)
G21429 NA other downstream 2844767 5056787 ~ 5057406 (-)
G22200 NA other upstream 465827 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 1530119 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 2032693 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 2225111 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 2259939 10187308 ~ 10190204 (-)

Expression


Co-expression Network