AMCG00007240 (tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678)


Basic Information

Item Value
gene id AMCG00007240
gene name tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8443327 ~ 8466794 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007240
GCAATCAGGGTAGAGCAAGCATCCTTTGTAACCCAGTGTTTTGCCTTTTAAAGAACCATgcagtatacattttattattttcctgtgaAGGCTGGTTGTGGATTAACATAGACCTTCTGCTGTTTTCCCATAGTGTTCTGGATGACGAGAGCAGCAACCTTCGGCAACAGAAGCTAGACAGACAGCGTGCTCTGCTAgagcagaagcagaagaagaagcgCCAGGAGCCGCTGATGGTGCAGTCCAACGTGGATGGCCGCTCGCGCACGCGCAGGATGAAGCAATCTGAGGAGCAGGCCCCGCTGGTGGAGTCCTACctcagcagcaacagcagcaccaTCTACCATGGAATCGATGGTCCAGCTGCCTTTCAGGACGAGGTGCAGGACCTGGGGAGTCAGATCCAGATCCTTACGGTGGGGCAGTCCAGTACAGATGAGGGGGAAGGAGACCCTGTGACCAGTGCCCAGCAGCAGGGAAAACAGGACCTGCGAGTCACCATGCAGAAGAAAGgcatTTCCAGTAGTATGAACTTtgatgaagaggaggatgaggaggatgAAGACAGTTCCAACTCCTCTCAGCTTAATAGCAACACTAGGCCAGGCTCAGCCAGCAGCAAGAAATCCAGCAAGGAAGCTGCATCAGCCTCCACCCCACCAATGAACGAGCCCATGGTAGATGTTGATGACCTGGAGGAATTTTCCTTGAGACCCGCCCCCCAGGGCATCACCATTAAATGCCGGATCACACGAGACAAGAAGGGCATGGACAGAGGAATGTACCCCACTTACTACCTCCACCTGGAAAGGGAGGACGGCAAGAAGgtCTTTCTGTTAGCTGGAAGGAAACGAAAGAAGAGCAAAACCTCAAATTACCTCATCTCCATAGACCCAACTGACTTGTCTCGTGGTGGAGAGAGTTTCATAGGGAAACTCAGatcAAACTTAATGGGGACCAAGTTTACAGTTTATGACAATGGTGTGAATCCCATGAAGACCACCTCCAGTTTAGAAGCAAGCAACCTCCGTCAGGAATTGGCAGCTATCTGCTATgaAACTAATGTTTTAGGTTTTAAAGGCCCTCGGAAAATGAGCGTGATCATCCCAGGAATGAACATGGATCACGAGAGAGTCTCCATCAGGCCGCGGAACGACCACGAGTCTCTGCTGGCGAGATGGCAGAACAAGAACACGGAGAGTGTGATTGAGCTCCACAACAAAACGCCCGTCTGGAATGATGACACGCAGTCCTACGTCCTCAATTTCCACGGCAGAGTCACACAAGCCTCAGTGAAGAATTTCCAGATCATCCACGACAACGATCCGGACTACATAGTAATGCAGTTCGGTCGAGTGGCTGAGGATGTTTTCACAATGGACTACAATTACCCAATGTGTGCACTTCAGGCTTTCGCTATTGCGCTGTCCAGCTTCGACAGCAAACTGGCCTGTGAGTAGGGGCTCCGCGCGCGCAGTGTTCCTTTCCACGTTTTCTGTGGACCAAGCTGGCACCACTGACACCGCCCGAGACTCTGTAGACGTTTGGTTTCCCGAATCAAAAGCTGCAGAGACTTGGAAGGTGATGACATCTGAGAAACTCCATGGTTTCAAAGCAGTGGGATTTTCACTTGCAGAATGTGCAATGTGGTGGCTGTTGATTTTGACCGCTGTTTCAGACACGGGAAAAGATATCCCTGTGGGAAGTGTTGATAAGCACAAATAGTAACTCACTGTTGCATTGgaagcgtttttttttttatatataaattataagtAGTTTtaaggtttagtttttttattttattgaactttttatccacaaaggaaaaataaaagttcttAAGATATTGGAAATCTAATATATGTCTGTAATAAGGAGAGGCCAGATTTGTTTAAGGTTGCATATCAACTCCCTCACACTTATGTACTGTTAATGAAATCCAGTGGTTATTTACTCTTCCCCCGAACCTTACTTTGGCTAACAAGGTTTACATTCTCTTCTGTTGGAATAATAGGATGTGTGGTATTACCATGTATATGTGTCAAACATTTGGCCAATACCCATCTTCCATacgatatatttatatatgtatatgtgtgtgtatgtgtatatatacactctctatcacacacacattaaatattcactaatacagatttttgtattaatttaagatAAAGTGCCATCTATATCAGTGGATACACACTACATATTATAATCAATGTGAATATGAAGGGACTGCAGATTGTTGAATTCCTTGCTGTGATGATATTGCATTGCTGTTGACTGAAATACATGTAATGGCCAAAAGTGAATGCTTTAAGTTGTCTGTAATTATGATCAAACCAAAAAGAGTTCTCTCTCAATGTAGTACACCCtaaattaactgtttttttaatgtaagaatattatatatcagcatcaccatcagcccatatcgatcccctgctgaatgaaggcctccccgATCAACAGCtcctcttttccatgtcacgcttgcaa

Function

symbol description
tub Predicted to be located in extracellular region. Orthologous to human TUB (TUB bipartite transcription factor).

NR:

description
PREDICTED: tubby protein homolog

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007240 True 2505 mRNA 0.45 10 8443327 8466794

Neighbor

gene id symbol gene type direction distance location
AMCG00007239 rpl27a,LOC107687759 coding downstream 260141 8180558 ~ 8183186 (-)
AMCG00007238 NA coding downstream 338388 8103488 ~ 8104939 (-)
AMCG00007226 ipo7,LOC106587545,LOC106562356 coding downstream 471752 7947714 ~ 7971575 (-)
AMCG00007228 NA coding downstream 496386 7936262 ~ 7946941 (-)
AMCG00007227 wee1,LOC107758614,LOC106587548,LOC107583885,LOC107580369 coding downstream 509028 7928506 ~ 7934299 (-)
AMCG00007246 rras2,LOC106676223 coding upstream 85303 8552097 ~ 8560440 (-)
AMCG00007247 copb1 coding upstream 136684 8603478 ~ 8617299 (-)
AMCG00007248 psma1,LOC107748950,LOC107687760 coding upstream 153744 8620538 ~ 8626345 (-)
AMCG00007249 LOC105889041 coding upstream 228667 8695461 ~ 8698149 (-)
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding upstream 514776 8981570 ~ 9011201 (-)
G22217 NA non-coding downstream 183 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 188660 8253893 ~ 8254667 (-)
G22191 NA non-coding downstream 190663 8252027 ~ 8252664 (-)
G22111 NA non-coding downstream 458817 7913604 ~ 7984510 (-)
G22077 NA non-coding downstream 542152 7900802 ~ 7901175 (-)
G22249 NA non-coding upstream 223404 8690198 ~ 8690751 (-)
G22298 NA non-coding upstream 509323 8976117 ~ 8980818 (-)
G22305 NA non-coding upstream 714224 9181018 ~ 9184829 (-)
G22393 NA non-coding upstream 950974 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 1131898 9598692 ~ 9599154 (-)
G22200 NA other downstream 47103 8393196 ~ 8396224 (-)
G21942 NA other downstream 936452 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1100986 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 2389263 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2623043 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 990694 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 1493268 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 1685686 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1720514 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 1798251 10265045 ~ 10272695 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00161849_00169705 NA coding CI01000068 null 161849 ~ 169829 (+)