AMCG00007243 (rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592)


Basic Information

Item Value
gene id AMCG00007243
gene name rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8367436 ~ 8396242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007243
GTGTACCAATGCTCTCTGTACAGCCCAAAGGGAAACAGAAGGGGTGTGCTGGCTGCAACAGGAAGATTAAAGACCGGTACTTGCTCAAGGCTCTGGACAAATACTGGCACGAGGACTGTCTAAAATGTGCCTGCTGTGACTGCCGCTTGGGAGAGGTGGGCTCCACCCTGTACACAAAAGCAAACCTGATCCTCTGTCGCAGAGATTACTTGAGgctcTTTGGTACTACAGGGAACTGTGCAGCCTGTAGTAAATTGATCCCTGCCTTTGAAATGGTGATGAGAGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGgttTTGCGTTGGGGACAAGTTTTTCCTAAAGAACAACATGATTCTTTGTCAGATGGACTATGAGGAAGGCCAACTCAATGGGAGTTTCGAAACCCAAGTCCAA
>TU27825
ttatgtttgtgtattgAATAATTGATTCAAAGAGGGGGGAAGGGCTGCTAATCAGATCTGAGcataatgaattgatttaattaacagGGGAATCCGAGGGTCTCTGGGAACTGTGCATTTATTCAGGAGCAAGAGAGAGCAGAGCCCATAAATTGGGAGAGAAAGGCAGTGAGAGTATGCTCTTAGCACTTGTCAGGGCTGGCATTGGATGTTTTTTGAATATAGTTGCAGTTTCGGAGCAAATGAAAGCggaaaagaaacattttgctGGAAAGAAAGCTTTCCactcatcatcataatatagGGCTTTTGAATCCATTACATACAGTAACAGATTTAACAAGCAGGTCgactcatttcttttttttcctccttttttcctctcttttttattattattgaagatCTCTGCTGGCGAACAcgtcttgtgttttttttttttttttttttttttgggggggggggttgtaaattgcagttttagTTGAGTCCGTGGAGGcttattttgaaagcaaaggagCAAGTACGAattgaacaggaaaaaaaggtTGAATTTCCTGCTAGAAAACAAAACGCAACACAACAGCCCCTTTATTCGTTTTGAATGGGGTTCCGTTATTGAGCCGTCTAGTTTTAAAAGCCGGGCAATTTAAAGCTTTGCTGCCAGGGACGATCGCTAGTTTTATAGCAAAGGCTATTTCCCAGAGAAGACAAGTACAGCGGGGCGGTGTTGGCTGCTGCAGCCGGGGACGGATCGCCTGGAGCCGGACTCCTCGCTCTTCGGGACGATGGTGCTGGACAAGGAGGAAGGTGTACCAATGCTCTCTGTACAGCCCAAAGGGAAACAGAAGGGGTGTGCTGGCTGCAACAGGAAGATTAAAGACCGGTACTTGCTCAAGGCTCTGGACAAATACTGGCACGAGGACTGTCTAAAATGTGCCTGCTGTGACTGCCGCTTGGGAGAGGTGGGCTCCACCCTGTACACAAAAGCAAACCTGATCCTCTGTCGCAGAGATTACTTGAGgttTTGCGTTGGGGACAAGTTTTTCCTAAAGAACAACATGATTCTTTGTCAGATGGACTATGAGGAAGGCCAACTCAATGGGAGTTTCGAAACCCAAGTCCAATAGCTGGGGCCCCAGGCTGCTGAGCCACACTGGATGGATGTTCTGTTGCACTCGAAGTGAAGAGCCTCCGTCTGCTTGCCTGCAATACTTTTTAATCCTTATTGGTCTCGAAGgactgtattgtaaatgtaatacttttttgCCCCTCCCCCATCCCCAACACTGAGCAGTTACAAGTTTAGATGTACAGTTGTGCCTGCTTAGCCGAGCACTGTATTGCCTGTAtgtttgtgatgtttgtttCCCCTTTTGGGTTTTGTTCCTGGGAGGGTCTGTACAGtctgttttttctgtatatataaactggaacatttattttatgaaaatgtaatgcaattttaTTACTAGTGTGAATTAAAGATTCTTAAATGTT

Function

symbol description
lmo1 Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; brain; neural tube; pancreas primordium; and presumptive diencephalon. Orthologous to human LMO1 (LIM domain only 1).

NR:

description
PREDICTED: rhombotin-1-like isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007243 False 443 mRNA 0.48 3 8386070 8395869
TU27825 True 1500 TUCP 0.44 3 8367436 8396242
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Neighbor

gene id symbol gene type direction distance location
AMCG00007241 NA coding upstream 115617 8242184 ~ 8251819 (+)
AMCG00007245 rergl,LOC104925113 coding upstream 145800 8217578 ~ 8221636 (+)
AMCG00007244 NA coding upstream 162315 8187419 ~ 8205121 (+)
AMCG00007231 NA coding upstream 265648 8098065 ~ 8101788 (+)
AMCG00007230 tmem9b,LOC107700603,LOC107754675,LOC107585953,LOC107750540,LOC107674442 coding upstream 271254 8092029 ~ 8096182 (+)
AMCG00007252 NA coding downstream 276247 8672489 ~ 8687381 (+)
AMCG00007250 insc,LOC106561064 coding downstream 354925 8751167 ~ 8762076 (+)
AMCG00007251 insc coding downstream 381727 8777969 ~ 8784734 (+)
AMCG00007254 NA coding downstream 484642 8880884 ~ 8957404 (+)
AMCG00007257 NA coding downstream 782661 9178903 ~ 9185848 (+)
G22192 NA non-coding upstream 112781 8253893 ~ 8254655 (+)
G22076 NA non-coding upstream 466261 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 662077 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 691559 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 760365 7606579 ~ 7607071 (+)
G22204 NA non-coding downstream 48683 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 53842 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 54525 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 88020 8484262 ~ 8484504 (+)
G22212 NA non-coding downstream 95919 8492161 ~ 8492457 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 184015 8147398 ~ 8183421 (+)
G21891 NA other upstream 988490 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 1148961 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2591980 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2695291 5668196 ~ 5672145 (+)
AMCG00007242 NA other downstream 34860 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 301741 8697983 ~ 8711311 (+)
G22372 NA other downstream 1040282 9436524 ~ 9499728 (+)
AMCG00007278 NA other downstream 1540678 9936920 ~ 9965267 (+)
AMCG00007307 clg19h11orf96 other downstream 2214954 10611196 ~ 10613104 (+)

Expression

AMCG00007243(rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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AMCG00007243(rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592) Expression in each Bioproject

Bar chart with 6 bars.
AMCG00007243(rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network