AMCG00007248 (psma1,LOC107748950,LOC107687760)


Basic Information

Item Value
gene id AMCG00007248
gene name psma1,LOC107748950,LOC107687760
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8620538 ~ 8626345 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007248
AAAAAGCATAAtgaataacagaacaaaagagTGTAACGCAATATATGTGTTAAAGAACAGACCTTACGGCCTCTGCAGACAGTGGGGGCTGTTCCCCAGTTTATCGATGCTCTTTCTTTTGACATAAACGTGCAGCACATTTCTGCGATCCATTGCTTTTCCTTACGCGTCCCGCCGCTCAAGGGAAAAGCAAACGATCGTCCGAATCATTGTTTAGTGTTGCAGAGCAAGCAGCGGCAAGAATAGGAGATGtTCCGTAAccagtatgacaatgatgtCACTGTTTGGAGTCCTCAGGGACGTATCCATCAGATTGAATATGCTATGGAGGCAGTGAAACAGGGATCAGCCACTGTGGGGCTTAAGTCAAAGTCCCATGCTGTCCTTGTGGCTTTAAAGAGAGCACAGTCTGAGCTAGCTGCGCACCAGAAGAAAATTCTTCACGTTGACAGCCATGTGGGCATTTCCATCGCAGGTCTCACTGCTGATGCAAGACTTCTTTGTAACTTCATGCGTCAAGAGTGTCTGGATTCGAGGTTTGTGTTTGACCGGCCTCTTCCTGTCTCTCGCCTGGTGTCTCTGATTGGAAGCAAAACCCAGATTCCCACTCAGCGATATGGCAGGAGACCATATGGTGTGGGATTGCTCATCGCTGGCTTTGATGACATGGGCCCTCACATATTCCAGACATGTCCTTCAGCCAACTATTTTGACTGTAAAGCCATGTCCATTGGAGCCCGATCCCAGTCAGCTCGCACTTACCTGGAGAGACACATGGAGAAATTCCTTGACTgcaaTTTGAATGAGTTGGTCCAGCATGGTCTGCGAGCTTTAAGAGAGACCCTACCTGCTGAACAGGACCTAACAACCAAGAATGTGTCCATTGGCATCGTTGGCAAGGAAATGGAGTTCACTATCTACGATGACGATGATGTTGCCCCATTCCTTGAGGGCCTTGAAGAGAGACCCCAGAGAAAGATTGCACCACCTGCTGAAGAACCTGCTGTAGAGAAAGCTGAGGAGCCCATGGAGCACTGATCTGGGGACATGTCTGCCAAACAGCTGATGATGAAAAGCTCTTAATCTGTGACATACCTATTGTCAGTCTTTGACAAATGCATCCTGAAACCATAACAAAACCTTTAGGTGGGCAAAAAGAAGTTGTAAGAAAGCCATTTACCatgatatttactttttgttttctacaagGACTGTAGTTATATTCTGCTTTTCTATATGAACCAACTTtagaatgaataaaaaaataataaaaatgtgttttccctaAATGATTcagattgtaatgttttttgtttgtttttttacacttaagtgttcagtttaaaaagagctgctttcaatacaaataaaggaaGTGTTGTACCT

Function

symbol description
psma1 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA1 (proteasome 20S subunit alpha 1).

NR:

description
PREDICTED: proteasome subunit alpha type-1

GO: NA

KEGG:

id description
K02725 PSMA1; 20S proteasome subunit alpha 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007248 True 1386 mRNA 0.44 10 8620538 8626345

Neighbor

gene id symbol gene type direction distance location
AMCG00007247 copb1 coding downstream 3239 8603478 ~ 8617299 (-)
AMCG00007246 rras2,LOC106676223 coding downstream 60098 8552097 ~ 8560440 (-)
AMCG00007240 tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678 coding downstream 153744 8443327 ~ 8466794 (-)
AMCG00007239 rpl27a,LOC107687759 coding downstream 437352 8180558 ~ 8183186 (-)
AMCG00007238 NA coding downstream 515599 8103488 ~ 8104939 (-)
AMCG00007249 LOC105889041 coding upstream 69116 8695461 ~ 8698149 (-)
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding upstream 355225 8981570 ~ 9011201 (-)
AMCG00007256 sox6 coding upstream 465587 9091932 ~ 9098606 (-)
AMCG00007261 NA coding upstream 562266 9188611 ~ 9233981 (-)
AMCG00007260 plekha7,LOC103378745 coding upstream 691835 9318180 ~ 9318690 (-)
G22217 NA non-coding downstream 177394 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 365871 8253893 ~ 8254667 (-)
G22191 NA non-coding downstream 367874 8252027 ~ 8252664 (-)
G22111 NA non-coding downstream 636028 7913604 ~ 7984510 (-)
G22077 NA non-coding downstream 719363 7900802 ~ 7901175 (-)
G22249 NA non-coding upstream 63853 8690198 ~ 8690751 (-)
G22298 NA non-coding upstream 349772 8976117 ~ 8980818 (-)
G22305 NA non-coding upstream 554673 9181018 ~ 9184829 (-)
G22393 NA non-coding upstream 791423 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 972347 9598692 ~ 9599154 (-)
G22200 NA other downstream 224314 8393196 ~ 8396224 (-)
G21942 NA other downstream 1113663 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1278197 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 2566474 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2800254 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 831143 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 1333717 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 1526135 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1560963 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 1638700 10265045 ~ 10272695 (-)

Expression


Co-expression Network