AMCG00007256 (sox6)


Basic Information

Item Value
gene id AMCG00007256
gene name sox6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9091932 ~ 9098606 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007256
ATGAGCCAGGAGCGGGTGTCCTGGGACAAGGAGGAGAGTGCAGACGCCCACATGGCCTCCCAGTTGCCTCTGCACAACCTGCTGCACAACAAACCTCACCCCGAGGAGCTGCCCGCTGTCGTCACCAACATCCCCCCAGACTGCGACTGGGACAACATGGTGTCTGCCCAGCAACGCATGgaatCTGACAGCAATAAAGTATGTTCCCTCTACTCCTTCCGGAATAACTCTACCTCACCACACAAGCCCGAGGAGGGGGCCCGTGAGCGCAGTGACCTCCTGACAGGCTCCGCCTTCGGGACACCCGAGCGCCGCAAAGGCAGCCTGGCCGACGTGGTGGACACACTGAAACAGAAGAAGCTGGAGGAGATGACAAAGACTGAACAGGATGGTACGTCACACCCCCTCTCCTTTCCAATGCTTGGGATGTGTTACTGTGGCCCTGTGGCCCTGTTCTGA

Function

symbol description
sox6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within adipose tissue development; muscle cell fate specification; and skeletal muscle tissue development. Predicted to be active in nucleus. Is expressed in fast muscle cell; myotome; pharyngeal arch 3-7; and somite. Human ortholog(s) of this gene implicated in high grade glioma. Orthologous to human SOX6 (SRY-box transcription factor 6).

NR:

description
PREDICTED: transcription factor SOX-6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007256 True 459 mRNA 0.59 2 9091932 9098606

Neighbor

gene id symbol gene type direction distance location
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding downstream 80731 8981570 ~ 9011201 (-)
AMCG00007249 LOC105889041 coding downstream 393783 8695461 ~ 8698149 (-)
AMCG00007248 psma1,LOC107748950,LOC107687760 coding downstream 465587 8620538 ~ 8626345 (-)
AMCG00007247 copb1 coding downstream 474633 8603478 ~ 8617299 (-)
AMCG00007246 rras2,LOC106676223 coding downstream 531492 8552097 ~ 8560440 (-)
AMCG00007261 NA coding upstream 90005 9188611 ~ 9233981 (-)
AMCG00007260 plekha7,LOC103378745 coding upstream 219574 9318180 ~ 9318690 (-)
AMCG00007258 NA coding upstream 232583 9331189 ~ 9335174 (-)
AMCG00007262 rps13,LOC107586033 coding upstream 237121 9335727 ~ 9339155 (-)
AMCG00007259 NA coding upstream 251438 9350044 ~ 9383687 (-)
G22298 NA non-coding downstream 111114 8976117 ~ 8980818 (-)
G22249 NA non-coding downstream 401181 8690198 ~ 8690751 (-)
G22217 NA non-coding downstream 648788 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 837265 8253893 ~ 8254667 (-)
G22191 NA non-coding downstream 839268 8252027 ~ 8252664 (-)
G22305 NA non-coding upstream 82412 9181018 ~ 9184829 (-)
G22393 NA non-coding upstream 319162 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 500086 9598692 ~ 9599154 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding upstream 525960 9624566 ~ 9624878 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding upstream 535203 9633809 ~ 9640829 (-)
G22200 NA other downstream 695708 8393196 ~ 8396224 (-)
G21942 NA other downstream 1585057 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1749591 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3037868 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 3271648 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 358882 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 861456 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 1053874 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1088702 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 1166439 10265045 ~ 10272695 (-)

Expression


Co-expression Network