AMCG00007258


Basic Information

Item Value
gene id AMCG00007258
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9331189 ~ 9335174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007258
GGGCTGCCTAATTTGGTTACACAGTCCCTCCTTGGAAACCACGCCAGCGTAACAGGGTGTTCATTTCCCGTCTGACTTCAGTCACCAGACGAAACTGTTGTTTAACATGGAGACGCTGGTCTGTGGAGGAGAGTTTTAAAACCAGACCCGCGTCGGTTTTCTGTCGCCGCTCTTCCGTCGTGAACATGAAGCTTCTACCGTCTCCGACTATCGCCAGGACCGCCCGGAAAAATCAAGAAGTCGTTCGAAGAGTCGTGAATCGGAAAACAAGTGAATTTTCTGGCTACTTCAACCGCTAAAAATAAAGCCCTGAACATGGACTCCCCCGGCCAGACGTGGGGCAGGAAGGCGATGGAGCGCTTCGGCGGGCACGGCAGTGTGGCAGTGCCCTGGAGCTGGCCGATCTGGAGCgccctgctgcagcagctgcggGTCCTGCTGGAGTTCGTGTACTACAGCGTCTGGACGGTTTTCCAGATATGCCGTCTGGAGGTGCACTTCAGGATTATGGACGAGCTGGCGGGGCATCGCGTCCAGCACCTGAGCGCCGATGGAAACCCCGGCCAGTCCTTCATCATATCCTCCTCATACAACTCCAACACGGGCGTCCTTGTCTCGGGTTCAGGTCCGTTATGCGCAAACGGGGCGGACAGGGCCGGGAAGCGCGACCTCTCCAGCCTGCAGGCGGAGGACCTGTGCCGCAGCCTGGTGGACGACTTTGTCTTCCGCGCTGCCGGATGCTTCGACTCGGGTCCTGCTGACAGTGATGTCCCCCGGGAAGCCACTTCCAGCTGGGAACTCAAGCACCCTAGTTTTTGGGAAGCATGTGAATTcctggaaaaaaacaccatgGATGAGGTGTGCACAGAAAGCCCAGAAGACGAACCCCTTGAAGTCACGTCGGATGATCTTATGAAAAGTCTGCCTGACTGCAAACCGATTACAGTCCAGGATTCTTTCtgggatgatgatgatgaagatgcaGACAGCAGCTGTGAAGAGTTCAAAAGCGAGGACAGCCAGGCGCTGTGGGAGTCTTTTACAAAATCGAAAGACCCTTATAACACCTTCAGCTTCTCTGCTTGCCTGTCAAGCTGCTCCCAGAAGGAAAGTGTCCAGTCAGCTCCTCACACACTGAAGCATAAAGATGAGCAACGGGACAGTTCCTCTGCCGGTGACACAGAAGGAGAATCGCAAAACAAGAGCCTCAGGATGTACTGTCTGGGCCGTTCCTGGACAGACAGTGACAGCGACTGGGAGAGTTCCAGTGAAGCCAGCGAAGGAGATCTGGAGGAAAATGAGAAGCTATGGGAGTCCTTTAATAACCCCTCTGACCCATACAATCTTCTGCACTTTACAGCTTGTCCTGTGGCTTCAAGCCCAAAGAAGACATCTCAAGAGGGTCAGAAGAAGTGTTCTGGGCGAGCTAAACAAGATCGAAATTGCTCTGAGATAGAAAGTTTAAGCTCAGACAGTGTGTTTGAGAGTCCGTCTTTATGGCAGGACATTGACTTGGAAGAAAGGCAGCACTCTGAAGACCTGTCCTCTGATTCTGAGCAGAATGATGACCTTTGGAAGTCCTTCTCACAGAGCGCGGACCCCTACCACCCTTTACATTTCCGAGCTTGCCTTGAAAGCTCTCCAACTGCGAGAAAGAAAAGTATCCATCTTAAAAATGAAGAGAGTACAGCAAACATTTCACAGAAAGTCACCTGCTCAAAGCCAGTCTTGCCAAAGAGACATTTTAAGCATTACTGTCCCAAGAGTCTTCAGGTTACCATCTGGAAGAAATCATCAAATGTGGTCCCAGAAGGGGtccaaaagaaagatgaaaaacaaatgaaaaaggtgtCGTTTTCTCCAGTAGTCCAAGTCCATGTAATGCACGCCTGGTCGTTTGCGTCGCGTGCCGCCCGCCGAGGCCCCTGGGAGGAGATGGCCCGTGACAGAGTGAGATTTCGTCGAAGAATTCAAGACATGGAGCAGGCCATTGGCTACTGCTTCAGCACAGCGCACAGGGGGAAAATGCAAGACTACTTGTCTCACAAATGTCGCACTCCACCTGCAGTTGTAGCTTGAGCTCACAATCAGAACCTGCCTCACTGGTTTGCACATTACAAAGCCATTGCACTGAGaacttatttttaagttaaattatttatatactgtacatatgtgGATTTGTATGCCTTACACATAACAATACTGTACACCATATGCATTTTGTAGTGAGCAATAATTACCACAGACTTCTATTTTCATGTTGTGTGGCTATTTTATAATCtatttttgtagattttatttttcctttatgtttttaaagcttgTATTCTGTGTGCTGCACAGCTAATATTTATAGTGTAATAGAAAAACATTGGTATTGATTGCTAATACAAGTTTTGGAaacttttttaacatttctgtaaataaataaagcacttttttaGTGAATTCAGA

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007258 True 2457 mRNA 0.49 3 9331189 9335174

Neighbor

gene id symbol gene type direction distance location
AMCG00007260 plekha7,LOC103378745 coding downstream 12499 9318180 ~ 9318690 (-)
AMCG00007261 NA coding downstream 97208 9188611 ~ 9233981 (-)
AMCG00007256 sox6 coding downstream 232583 9091932 ~ 9098606 (-)
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding downstream 319988 8981570 ~ 9011201 (-)
AMCG00007249 LOC105889041 coding downstream 633040 8695461 ~ 8698149 (-)
AMCG00007262 rps13,LOC107586033 coding upstream 553 9335727 ~ 9339155 (-)
AMCG00007259 NA coding upstream 14870 9350044 ~ 9383687 (-)
AMCG00007268 NA coding upstream 76466 9411640 ~ 9426782 (-)
AMCG00007266 nat10 coding upstream 138719 9473893 ~ 9487688 (-)
AMCG00007269 NA coding upstream 160474 9495648 ~ 9511339 (-)
G22305 NA non-coding downstream 146360 9181018 ~ 9184829 (-)
G22298 NA non-coding downstream 350371 8976117 ~ 8980818 (-)
G22249 NA non-coding downstream 640438 8690198 ~ 8690751 (-)
G22217 NA non-coding downstream 888045 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 1076522 8253893 ~ 8254667 (-)
G22393 NA non-coding upstream 82594 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 263518 9598692 ~ 9599154 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding upstream 289392 9624566 ~ 9624878 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding upstream 298635 9633809 ~ 9640829 (-)
G22505 NA non-coding upstream 697954 10033128 ~ 10044315 (-)
G22200 NA other downstream 934965 8393196 ~ 8396224 (-)
G21942 NA other downstream 1824314 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1988848 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3277125 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 3510905 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 122314 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 624888 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 817306 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 852134 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 929871 10265045 ~ 10272695 (-)

Expression


Co-expression Network