AMCG00007263 (nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665)


Basic Information

Item Value
gene id AMCG00007263
gene name nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9396853 ~ 9410088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007263
ttaaaaactaaaacagggGCTGTGCTTGAGATCCGAGTGAATGAACCATCGAGTGAAGAAGCAGCGGACGAAATTGCGAAAACAAAGCCATGACAGCTAATAAAGTATGTTCGCGTACAGGTTTATGCCATTTCTGCTCAGTGCTCATCTGCCTCCTTGTCTGTGCTGAAGCAGTGCCTATTAGTATAGACAAGACAAAAGTAAATCCcccagaagaaaaacaagaagaaaagtCACAGAGTGCGGATACTGGGCTGCACTATGATCGCTACCTCAGAGAAGTCATTGATTTTCTAGAAAAAGACCAACATTTCAGAGAGAAGCTGCACAACACGGACATGGAGGACATAAAGCAAGGAAAGCTAGCCAAAGAGCTTGACTTTGTGAGCCATCATGTGAGAACAAAGCTGGATGAGTTGAAAAGACAGGAGGTGAACAGGTTACGAACGCTGATTAAAGCCAAGCAAGATATCCAAGGGGGGAAAGACACTATTATTGACCACCAGGCTCTGCTCAAGCAGTTTGAGTACCTGAACCACATGAACCCGCACACTTTTGAGGTGGAAGATTTGGACAGGTTAATTAAATCAGCTACAAAAGATCTAGAAAACTATGACAAGGAGCGCCACGAGGAATTCAAGAGGTACGAGATGATGAAAGAGCACGAGAGGAGAGAGCACTTGAAGTCCCTGGACGAGGATCAcaggaagaaggaggaggagcaTTTTGAGGACCTGAAGAAGAAGCACGCCGACCATCCCAAAATCAATCACCCGGGAAGTCAGGACCAGCTGAAGGAGGTGTGGGAGGAAGCTGACGGGCTGGACCCTGAGGATTTCGATCCAAAGACTTTCTTTAACCTGCACGACACCAATGGGGATGGCTACTTCGACGAGCAAGAGTTGGAAGCACTCTTTACTAAGGAGCTGGAGAAGCTCTATGACCCCAGTAATGAGGAAGATGACATGGTGGAGATGGAAGAGGAGAGACTGCGGATGAGAGAGCATGTTATGAATGAGGTTGATTCAAACAAGGACAGACTGGTTTCCTTAGATGAGTTCTTGGTGGCGACAAAGAAAAAGGAGTTCCTGGAGCCAGAGAGTTGGGAGaccCTGGAACAAAATCCTGCTTACACGGATGACGAACTCAAGGAATTTGAGGAGCAGCTTGCCAAGGAGGAGAAAGACCTGAACCAGAAAACAGTTGAtcttcagaaacaaaaagagGAGTTGGAGAGACAACAGGAGCAACTGAACGCTCAGAAATTAGAACTGCAGCAGGCTGTAGAACATATGGAGAAGTTAAAAAGTCAAAAAGCACAGGCTCCTCCAGATGGCGCCGATGATGGAAACGCACCTCCAGCTGCCCCAGGAGGAAATGGTGAGCCCCTGCCTCCAGGACACAACGCAGAAACGCAGCCTCACTCTTAACCTGCCTTTCCACTCGGGTCTCCATGTGCCGAATGTGTGTCTATGTGAGCCTGCAGCCCGTGGACATGCAGGCCTATATAGACGAAACAACCTGCAGACGTTCTCAATCAGTTGACTCCAAAACGAAACGAAAAAacttctgtaatgtttttggttttgttttcctgcaatTGTAACCTACCAATTTCATGCTTGTCAGGGTAAGCACTGTTAAGAGGGTGAATTATTTATAGTCGCAAATCACAAAGAGGTGCCTGACAGGAGTTTTTGTCAGGAAAGCCGTCACATTTTCACCTCCTCGATATGGTAATCTGTGAAACACTTCAAAGGAATTGCtggtaattgtttttattattattattttaatttgatcctGATGAAGGTTGTTATTGGGTCATTCTGGAGGTGCTAATTAAGATAGTTGTTCCTGGAAATCTATTTTGTGCCTCATAAAAAGTAATGTGTGTAATATGAACCATTGTCTCATTGCAAATGATCAATTCATCTATTTGTATGCATAAGACCCCACTAACTAGTCAGGGgtacaaataaaatcaggaaTTACTTCTATTTTAGAATATTTGAAGGTATTTTATAGTCTTACACTGATAGAGCAGTGACGGCTTTAGATGGCACTGTGCGAACTGGATCGGTAACTAATCCAATAGATGCGGTGAATTTGGCGGGGGaagaaatgtttacatttactgttttttggCTGCATAATGCTTTCATGTGAAACATTTGATAATGAATGTCATTTCCCTTTGACTCCGGCCATGAACACAAAGCAACTCCACCTCCATAGCCAAATGACACTAACAGTCTAAGTGATTCCAACATCTTTGTATTGATAATTTGCTACAAGATCAAGGTTTCCACTTCCCCTTTCATGAAAGTGAAATGAATGTATATGTCCTTatgtgatacaaaataaatattcaggaACTTAATCGTTTTTGGACTGCTGTTTTAATAACGGGGAAGACATGGTATGTGTCATGTACCTGTAATAATTAGATGtacagtaaaatgttatttacgGTTCATATAAAGttactttttttaatacctTCAATTTGATCACTATTGTGTTGGATTTCCATTGACGTATACATAATTAAGTTTCCTAATGAACATTTTTTGGGTTGTTTAGAAAGAATGGAACTGCAGTGAATTGTTTCCccagttaaaaagaaaaaacaaacactgcatgtctctttaaattacattttgtcaaatTTGCATTTGGTTTCTGTCTCAAGGGGAATCTTTTGGGTATTTTCAGTGTTCAGATCTtttgaaactattttaataCTACATATTGTACTCTTCCTATTTGTAAACTGCACAATTAGGAGTACTACACAAACTAAGATCTCAGCTAACCTCTACTGCTATAAACTAtgttctgctaagaaataaggaaaatatagatttaatatCTAAATAAAGATGTTTCCTTCTTATAGAAACTGAATGCTGAAAAATTAGAGATGAGCATATATGTTTCTGCCAGTCATTTTTACTACTATGGTCAGGTAGAAAGTCATTCAACTTGTTGTAGAACCAGATAAAGTTTGTGTGTTGTCAATCTCAGATTGGTAAAAATGTCTCAGTCCGCCATTTCACTGCAATCTTGAAATACATAGAGATAAGCTTGTCAAAGTATTTTAAGAACTGTTTGATGCTGTGTAGAACAaggaccaaaatgtaaccccatCTTTTCTGATTAAGTTTGTCCTTGATTATGATCA

Function

symbol description
nucb2a Predicted to enable calcium ion binding activity. Acts upstream of or within response to food. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; gonad; and pectoral fin. Orthologous to human NUCB2 (nucleobindin 2).

NR:

description
PREDICTED: nucleobindin-2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20371 NUCB; nucleobindin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007263 True 3187 mRNA 0.40 13 9396853 9410088
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Neighbor

gene id symbol gene type direction distance location
AMCG00007257 NA coding upstream 211005 9178903 ~ 9185848 (+)
AMCG00007254 NA coding upstream 439449 8880884 ~ 8957404 (+)
AMCG00007251 insc coding upstream 612119 8777969 ~ 8784734 (+)
AMCG00007250 insc,LOC106561064 coding upstream 634777 8751167 ~ 8762076 (+)
AMCG00007252 NA coding upstream 709472 8672489 ~ 8687381 (+)
AMCG00007264 NA coding downstream 20331 9430419 ~ 9433315 (+)
AMCG00007265 lmo2 coding downstream 112346 9522434 ~ 9526650 (+)
AMCG00007270 alx4,LOC107593440,LOC107754690,LOC107683603,LOC107688160,LOC107750553 coding downstream 214413 9624501 ~ 9634126 (+)
AMCG00007276 NA coding downstream 383646 9793734 ~ 9849791 (+)
AMCG00007277 NA coding downstream 511781 9921869 ~ 9925952 (+)
G22364 NA non-coding upstream 373 9396221 ~ 9396480 (+)
G22344 NA non-coding upstream 57753 9335718 ~ 9339100 (+)
G22285 NA non-coding upstream 418657 8976101 ~ 8978196 (+)
G22230 NA non-coding upstream 792795 8592139 ~ 8604058 (+)
G22212 NA non-coding upstream 904396 8492161 ~ 8492457 (+)
G22373 NA non-coding downstream 78624 9488712 ~ 9492667 (+)
G22417 NA non-coding downstream 232509 9642597 ~ 9644747 (+)
G22528 NA non-coding downstream 742401 10152489 ~ 10241408 (+)
G22596 NA non-coding downstream 910381 10320469 ~ 10321858 (+)
G22652 NA non-coding downstream 1216586 10626674 ~ 10685068 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 685542 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 945271 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 1000611 8367436 ~ 8396242 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 1213432 8147398 ~ 8183421 (+)
G21891 NA other upstream 2017907 7374323 ~ 7378946 (+)
G22372 NA other downstream 26436 9436524 ~ 9499728 (+)
AMCG00007278 NA other downstream 526832 9936920 ~ 9965267 (+)
AMCG00007307 clg19h11orf96 other downstream 1201108 10611196 ~ 10613104 (+)
AMCG00007337 NA other downstream 5068585 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 5866623 15276711 ~ 15287960 (+)

Expression

AMCG00007263(nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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AMCG00007263(nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00007263(nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network