AMCG00007271 (kcnj11,LOC106561047)


Basic Information

Item Value
gene id AMCG00007271
gene name kcnj11,LOC106561047
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9686106 ~ 9687263 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007271
ATGTTGTCAAGAAAGGGAATTATTCCTGAAGATTTTGTGCTGACACGTTTAGCGGAAGATGTCTCGCAACCCAAGTACCGAGCCAAGCAGAGGAAGGCTCGGTTTGTGGCCAAGAAGGGGACCTGTAATGTCGCTCACACCAACATTAGAGAACAAGGACGGTTTCTGCAGGATGTTTTCACCACCTTAGTGGATTTAAAATGGCTTTATACTCTGATCATATTCACCATGTCGTTTCTGTGCAGTTGGCTACTGTTCGGCATGATCTGGTGGCTCGTCGCTTTTGCGCACGGAGACCTGGACCAGAACCACGACAGTTTTGTCCCCTGCGTTACCAGCATTCACTCCTTCTCTTCGGCCTTCTTGTTTTCAATCGAGGTCCAGGTGACTATCGGCTTTGGGGGGCGGATGATCACAGAGGAGTGCCCCTCGGCCATCCTGGTCCTGATCGTGCAGAACATCGTGGGCTTGTTGATTAACGCCATCATGCTGGGCTGCATCTTTATGAAGACGGCTCAGGCCCACCGGCGGGCTGAGACACTCATCTTCAGCAAGCACGCTGTCATCGCGGTCCGGAGTAACAAACTGTGCTTCATGATCCGAGTGGGGGACCTGAGGAAGAGCATGATTATCAGCGCCACCATTAGAATGCAGGTGGTGAGGAAGACCACCACGCCAGAGGGGGAGATGGTCCCTCTCGACCAGATAGATATTCAGATAGAGAACCCAGTCGGGACAAACGGCATATTTTTGGTCTCCCCACTCATCATATGTCACGTCATCGACAAAACCAGCCCGCTGTACGAGCTGTCTGCTACTGACTTGCATCAGCAGGACTtggaggtggtggtggttttGGAAGGGGTTGTTGAAACTACTGGAATCACCACACAGGCTCGAACCTCTTACGTGTCGGAGGAGATACTCTGGGGTCAGAGGTTCGTGCCCATCGTCTCCGAGGAGGAGGGCAGGTACTCTGTGGATTACTCCAAGTTTGGAAACACGGTCAAAGTACCGACCCCCAGCTGTAGCGCTAAGAAACTCGATGAAGACGCAAACCTCCTCAGGGTCAAACTGTATGACTCTTTGTCCCCGAAGACAGCGGTGAGGAGAAGAAACGCCTCGACGCGACTCAAGCAGCGGAGTAGCAACCAGTAA

Function

symbol description
kcnj11 Predicted to enable ATP-activated inward rectifier potassium channel activity. Acts upstream of or within type B pancreatic cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 2 and glucose metabolism disease (multiple). Orthologous to human KCNJ11 (potassium inwardly rectifying channel subfamily J member 11).

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 11-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007271 True 1158 mRNA 0.52 1 9686106 9687263

Neighbor

gene id symbol gene type direction distance location
AMCG00007272 ext2 coding downstream 3027 9644435 ~ 9683079 (-)
AMCG00007269 NA coding downstream 174767 9495648 ~ 9511339 (-)
AMCG00007266 nat10 coding downstream 198418 9473893 ~ 9487688 (-)
AMCG00007268 NA coding downstream 259324 9411640 ~ 9426782 (-)
AMCG00007259 NA coding downstream 302419 9350044 ~ 9383687 (-)
AMCG00007273 abcc8 coding upstream 3010 9690273 ~ 9750042 (-)
AMCG00007274 ush1c,LOC106561052 coding upstream 67661 9754924 ~ 9792167 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding upstream 251928 9939191 ~ 9943224 (-)
AMCG00007279 NA coding upstream 338221 10025484 ~ 10031683 (-)
AMCG00007280 LOC107758757,LOC107549278 coding upstream 348278 10035541 ~ 10037117 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 45277 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 61228 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 86952 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 248837 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 501277 9181018 ~ 9184829 (-)
G22505 NA non-coding upstream 345865 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 398497 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 686476 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 859733 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 923926 10611189 ~ 10612988 (-)
AMCG00007267 NA other downstream 222769 9457488 ~ 9463337 (-)
G22200 NA other downstream 1289882 8393196 ~ 8396224 (-)
G21942 NA other downstream 2179231 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2343765 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3632042 6007640 ~ 6054064 (-)
AMCG00007282 NA other upstream 272799 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 465217 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 500045 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 577782 10265045 ~ 10272695 (-)
G22838 NA other upstream 3664254 13351517 ~ 13352073 (-)

Expression


Co-expression Network