AMCG00007278


Basic Information

Item Value
gene id AMCG00007278
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9936920 ~ 9965267 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007278
atgagAACCATACAACAGTCCAGGATGGGAAGGCGCAATGGCAGCTATGCTACGAGAAGAAGTAATGGCTCAGCCGGACACTGCACAACACCAAAGAAAAGCTTCTCACCAAAGTCGAATTTATCAGACTCCAGGCTGTGCATCCAGTCCCACATCTCCTTGGCCTTCTCCCTGTGGTGGGGAAAGGAACACGGGAAAAAGCTGAAAGGAGTGAGCTCCCTGGTGGCGGAGACGGGCTGTAGGTTCTGCAAACTTCCCAAGGGGGTTAAGATGCTGATGTCGTACACTTTAACAATTGCTAACCAACCAGGACTTCCCCAGCAGTACCCTCCCCCACTGCTGCCGAAGCCTAGCAAGGACAATGCCCGGCTGCAGAAGCTGCTGAAGAAAACCTCCAAGAAAAAGTCTGTCCCCCCAACCCCGCAAACCCCTGTCCCTTTCCGCTCCAGCCTCTCCCCGGTGAGTGAGGCCAGTCCTGACCTCGAGCGCAGCGATCACTCCACGCCTCCCAGGACACCAGAAATGCCAGCCTATGCGGGTACCCTGCAGCCATCCAGGTTCTTCATCAAGCCAGTGATCCAGCACGCACCGTCCCCGTATCCAAACCAAATACCCTTCAGTTACGGCAAGCCCGGAAGAATCTCCCCGCAGCCGTTTACTACACCAAGCCGTGCCTTAGAACATCAAGCTCCGATCCACAAGCAAGCTCCTGCCCCAGCTCCTGCCCCCTTTCAACAGGCTGTGGAAAGGAACCATGCTCATCCTTCGACTCTGTTCCCTACAACAGCTGTGGCAGCAGCACCGACAACCAAGTCCCTAGGGCTTGAGGGCAATGGAAGCTCTACGCACTTGGAATTTACCACTCAACATGCATCTGGAACTGAAGTTCCAAAACCCAAAACCCCTTTATTTGATGTTCCCCAAATCAAGACGTACACAGCGAAAAGTTCAACATATGAGGCATCACTTTATGACATTTCTGGAATTAAATCAACTTCTTATGCAACATCTTTGGCAACACTTACAAGAAGTAAAACTCCTACATTTGAGGTTAGGAGAGTTATGACACCAACATATGAAGTTTCCACGACTAAAACTCTCTCCCATGAAGTGCCCAGGCCAAAGACCCCTTTATCTAAAGCCCCTTCTAATGATGTCTCTTCAACTGTAAAACCATCTGTCGAAGATGTAGGCCTGAAATCACCCAAGTTTGAAGTctctcaaaatcaaaataacatttcccCACATGAAGCTTCGAAAGCTCCTTCACATGCTGTAATAAGTCCTAGAACTCCAAATGGATTACCAGTATCCAGTGAACTCTCGTATGAGATTCCAAGACCTAAAACCCCCTCCAATGGAGTGTCAAGACCCAAGACTCCTTCGTATGAAGTCCAGAGATCCAAGACTCCTACCCATGATCTCTCTAGACCTAAAACTCCTTCATATGAACCTCCTAAATCTAAGCCTAAATCACAATATTATGGCATGACCCCAGCTTCAATTTTTGATAGTGTCCGAGCTGCCACACCCTCTTTTGGCATTTCGAGACCTAAAACCCCAACAAATGAAGCATCAAGACCCCAACCCCCATTATATGAACCATCCAGACCTAAAACACCTCCCAATGAAACATCCACAACATCATCAGCAACTCCATCTTATGAAGTCCCTCAATCCAAAACACTCACTAGAGAAATTGATGGGCCTATAACCTCTTCAAGTGAAATGACAGGATCTAAAACTTCTATGCTTGAAGGGTCTGTCCATAAAGCATCTATGTATAGTTTATCTGTAGCTACATCATTATCTTCAAATGAAACCCCAAGACCAAAAACACCTTCTAATGATGTACAAAGACCTAAAACACCTTCATATGAATTACAGCCAACTTATGAAGGATACAGGGCTAAAACACCCACATATGAAGCAGGGGTGCCCAAGTTCCCAATATATCCAATGTCAAGAGCTAGAACATCCACTTATGAGTTCAATAGggcaaaaacacaaaccaccAAAAGTGTAACTGAAACGCATATCCAACAAGAGAAAGCACCAACACAGGAAGCACCTAGACCTAAAACACCTACTTACGAAGGATACAGAGCTAAAACACCAACACAGGAAGCAGCTGAGCCAACACCCCCTGTATATCCAGTGTCCAGAGCTAAAACGCCTACTTATGAGTTCAGCAGGGCAAAAACACCAACCACCGAAGTTGTGACTGGAAAACATACTCAACAAGAGAAAGCACCAACACTGGAAACACAGAGACCCAAGACCCCTACTTTGCAAACTACTAGGGCCAAAACTGCTATGAATGAAGTTTCAAGTGCAGATACCCCCCAAAAGCCTTCACTGCCAGCAAGTCATCCAAGTGGTGTGAACCTAGCTCTGCCTTCATCTCACCCAGGAGATGGGCTTAAAGACCAGGTTGCAAAAGCCAAACCAGAAACTGCAGAAGCCAATGTCACTGCTTCACAAGACAAAGCAGCACCTCCAGCTGGACCATCAGCTCCAAAGGAAAACGGTAAAATCAGTGACTCTTTTCCAAAAGCAGAACCTCTGCTAAAGGTACCGCAAAAACCAAAGGGGCTGAAATCCAAACTCAGTGGCTGGTCTCGGCTTAAGAAGCATATGGTGGTGGAGCCTGAAGAGCCCAAGTTTCCCGAGCCTGAACCTATACCTGAACCCAAGCCTGAGTCTGAGCCCAAGAAAGAAATTCCAGAACACAAAAATGACAAGCCCAAAGCCTCAGAAAGTGCCGACCAGTCCAGTGGCAAGGAGGTGGAGAAACACAAAGACTCCAGAGCGACTAAAATGTGGGATGCTGTcctgtttcaaatgttttcGGCCAAAGAATGCATAATGCAGCACATCACCAATACCAAACCCGAAACTGAGAAAAAACATACCGCACAGGAGAAAAAAGACCTGCCCTCATTTATCTACCATCTGCCCCTGCTCTTGTACAAGCCACGGTTCGATGCCAGGAAGTTGAAAGAAGCTGCTTCAAGACCACTGACAAAAATCACTTCCGTATTTGAGATGGGCTTGCTTAGTCGCAAAAACACAGAGGAAGAACCAAAAGACTTTAACAGGACTGCCAAAGGGTGGGATTTGAAATAG
>TU28168
ATTgctttctgtttattattatatgattatcATCATTGAGATGCTAACAATCACAGGTCTACAGACAGTACTGAGGAATAGTTAcgctttttatttacaaaaatgagAACCATACAACAGTCCAGGATGGGAAGGCGCAATGGCAGCTATGCTACGAGAAGAAGTAATGGCTCAGCCGGACACTGCACAACACCAAAGAAAAGGTAAGAGTGAGTTGTGTCTGTGCCAGTGAGCTAGTTGTAGTCTGGGTCGCTCTTGCAAACAGTTGTCTTCTAATGAAACAGTCCAAACTCCAGGGTGCAGGGTGGGTGCATGCTGGGGCAGATGATTCCTGGTGGGATGGCTTACTTTCTGCGGCGAGCTGCAGCTCCcttcttgctgATTTACTGAGCTCCTCCACTCTGCCACGTAGTGCTATAATCTATACTTCTGTCTCTTCAGCTTCTCACCAAAGTCGAATTTATCAGACTCCAGGCTGTGCATCCAGTCCCACATCTCCTTGGCCTTCTCCCTGTTTATCCTCACTCAGATGATCAATGTTAAGAGGCTTGCGTCTGTCTGCCAggatcttcttcttcttttctctctcagtcTGCTTCTTGCCTCTCTTCTGGTTACCTTGGCCAAGTAGCTGCTGTACTGAGAACCCATGCTGGTAAGAGCCTTCTTCTTCTTGGCATCTTCATCAGCTCTCTTCTTCtggtcctcctcctcccttttcagcctctcctcct

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007278 True 3129 mRNA 0.47 5 9937022 9965267
TU28168 False 734 lncRNA 0.47 5 9936920 9941888

Neighbor

gene id symbol gene type direction distance location
AMCG00007275 myod2,myod1c,LOC105028891 coding upstream 3977 9930888 ~ 9932943 (+)
AMCG00007277 NA coding upstream 10968 9921869 ~ 9925952 (+)
AMCG00007276 NA coding upstream 87129 9793734 ~ 9849791 (+)
AMCG00007270 alx4,LOC107593440,LOC107754690,LOC107683603,LOC107688160,LOC107750553 coding upstream 302794 9624501 ~ 9634126 (+)
AMCG00007265 lmo2 coding upstream 410270 9522434 ~ 9526650 (+)
AMCG00007286 NA coding downstream 101964 10067231 ~ 10071468 (+)
AMCG00007287 ctsd,LOC107382058,LOC107686244 coding downstream 108521 10073788 ~ 10086146 (+)
AMCG00007284 NA coding downstream 173470 10138737 ~ 10154181 (+)
AMCG00007288 NA coding downstream 237111 10202378 ~ 10215267 (+)
AMCG00007285 psmd13 coding downstream 263797 10229064 ~ 10236566 (+)
G22417 NA non-coding upstream 292173 9642597 ~ 9644747 (+)
G22373 NA non-coding upstream 444253 9488712 ~ 9492667 (+)
G22364 NA non-coding upstream 540440 9396221 ~ 9396480 (+)
G22344 NA non-coding upstream 597820 9335718 ~ 9339100 (+)
G22285 NA non-coding upstream 958724 8976101 ~ 8978196 (+)
G22528 NA non-coding downstream 187222 10152489 ~ 10241408 (+)
G22596 NA non-coding downstream 355202 10320469 ~ 10321858 (+)
G22652 NA non-coding downstream 661407 10626674 ~ 10685068 (+)
G22712 NA non-coding downstream 1146076 11111343 ~ 11111723 (+)
G22720 NA non-coding downstream 1264558 11229825 ~ 11230393 (+)
G22372 NA other upstream 437192 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 1225609 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 1485338 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 1540678 8367436 ~ 8396242 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 1753499 8147398 ~ 8183421 (+)
AMCG00007307 clg19h11orf96 other downstream 645929 10611196 ~ 10613104 (+)
AMCG00007337 NA other downstream 4513406 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 5311444 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 5401394 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 6659123 16624390 ~ 16662700 (+)

Expression


Co-expression Network