AMCG00007279


Basic Information

Item Value
gene id AMCG00007279
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10025484 ~ 10031683 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007279
GCCATTTATACCTTCTTAGCATTTCAGCTGCTTGTGGCTTCCCAGTCTTTTCCATCCCTCCACCAGGTCTGTCCTGATCTTGTTCTTCTCTTATAGGTGTTGAAAAAAGCAACAAGCCAACATGTCGGAGAAAAAGATGTCAACTAGCCGTAAGCAGCATCTGAAGaGCTTGATGCTCCAGATTGCCAAAACAGAACTTGAGAAGGAAGAATCTGAGAGAGCAGCACAGAAAGTCAAGTACCTGGATGAGCACTGCCCTCCTCTGTCACTGGGTGGGTCCATCCAGGATTTACAGGAACTGTGCAAAAAGCTGCATGCAAAGATTGATGTGGTTGATGAGGAGAGGTACGACATGGAGAGCAAAGTGAACAAGTGTGCCAAGGAGCAAGACCTGCGTGACGTTGGGGACTGGCGTAAGAACATTGAGGAGAAGGCTGGCATGGAAGGCAGGAAGAAGATGTTCGAGGCTGAGGCCTAAACAGAGGATCGGCggcttgttgtttgtttgtaatacCTGTCATATAGGCtctccatatttttttttccccgacGGACTTTGTTTAGAGGAACAGGCTGATGTCTTAACCACGGCTGATTTGGAGCTTGCTGCCCCATTACCATCGTGTAGCTGCAAGGTGATCGATGTTGCCGTAGCATTACCAAAAACACACTGCTTTGGAAACCAGTTGTTGTgcggaaaatatattttgtcgagaaatatatttcagtgcaaaaaaataacttgtgtaaataaatgatttaaagaaagctttcattttttaagcctATGTGATCTGAGATCTGTTTTTCCCTGGTCACCTCTCTGAATCACATTTCATAGTTCTGCCAGGTGCCTTTTATAATAAGCCTTTGTTATAGTGGCAGACATTTTACAAGTGGAGAAGTCTgcattaattacagtaatagtGTGGCTTTGAATGCATTATTCATATTGAATTCCATCCAGtcattaatattacatatagCAAAGAGCTGTGTGGCATAACAAAACTCGTCTAATCCATGTTTATATTTGGATTACTTTCATCAAAGATCTGCATTACATATCCTCTCTTAAATGTGACAGTTAAAGTAGTGACAGAAATGCATCATATATCTTCTGGCATTGATAGTTGTAATTTAAAACGTTGAAGTTTATAGCATAATAGAGGATAAAGAATATAATTTATGATTAGTTTAAACAAGGATGTTCTTACTTGTGTTCACAAagtatcacattttatttacaatccCAAACCAACAATGTAACAAGGCAACAGAAAGCCGCATCCTTCCCATAATGCTCTTGGACTCCGAGACTTGGAGGGGTAGTGGTTTCCTGGGACTTGTCCTGgggactgattgactgactgaagAAGGAGAAAGAATGGGTATTATCTGATTCCACAACAAATCCACTCTGGGAATttgcattaatatacatatgGATAACAATACACCATTTCAAATACAGGTTTCCAATGTACCCTCAAGTTACTATGAGCAGATGTCAAATGCAAAAGAACCGCCAAGGACATCAGAAAGGGGCTCTGAACCGCTTTTCTTCATTTGCATGTGGCgctatacaatatacaataactgCAGTATTAGGTAACCATTTACAATGCAGTAGCAACTACTGGCAGCTGAACCctcactgtgtttttaattgaggAAAACCCAGGAAAGATTTTTTCTAAAGCCAAGCCTTGTCACTGCATTTCCATGGGATTAAAGGCACCTTTCATACACTTTAGTTGAACCCTGTTTAATGAATTACTGCAGCTAGAATACAGAAGGGATTTCATTGTTTAAACCATGaaaaacctattttaaaatatttggagGTTCTGTTTCTTAGTTACACCAGGGATATCAGTCACACGGAATGTGCATGGTCTGCATATTGCTTTGGTACCCCAGGGCTAATAAAACTACTCCGATGTAAGCGGCTGATTACCTAGTCGGGATAATGCTGTGTACCATGTGGGGATACAGGGGGCGCCATTTTCATTCAGCTCGCACCAAAACAGGAATACCTGGAATAAAGCAAAACCAACGCGGGATGGTGCATATGAATTGAAATACCTGCGTTACGaccacattcattaaaaaaca

Function

GO: NA

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007279 True 2118 mRNA 0.41 6 10025484 10031683

Neighbor

gene id symbol gene type direction distance location
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 82260 9939191 ~ 9943224 (-)
AMCG00007274 ush1c,LOC106561052 coding downstream 233317 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 275442 9690273 ~ 9750042 (-)
AMCG00007271 kcnj11,LOC106561047 coding downstream 338221 9686106 ~ 9687263 (-)
AMCG00007272 ext2 coding downstream 342405 9644435 ~ 9683079 (-)
AMCG00007280 LOC107758757,LOC107549278 coding upstream 3858 10035541 ~ 10037117 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 17498 10049181 ~ 10056129 (-)
AMCG00007291 NA coding upstream 59630 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 129769 10161452 ~ 10186176 (-)
AMCG00007294 sirt3 coding upstream 187632 10219315 ~ 10228702 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 384655 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 400606 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 426330 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 588215 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 840655 9181018 ~ 9184829 (-)
G22505 NA non-coding upstream 1445 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 54077 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 342056 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 515313 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 579506 10611189 ~ 10612988 (-)
AMCG00007282 NA other downstream 24319 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 562147 9457488 ~ 9463337 (-)
G22200 NA other downstream 1629260 8393196 ~ 8396224 (-)
G21942 NA other downstream 2518609 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2683143 7324424 ~ 7342341 (-)
AMCG00007299 NA other upstream 120797 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 155625 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 233362 10265045 ~ 10272695 (-)
G22838 NA other upstream 3319834 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3913960 13945643 ~ 13946065 (-)

Expression


Co-expression Network