AMCG00007280 (LOC107758757,LOC107549278)


Basic Information

Item Value
gene id AMCG00007280
gene name LOC107758757,LOC107549278
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10035541 ~ 10037117 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007280
ATGAGTAGAAGCGAGCAGACAGAGCAGAAGCCAGCGGTCATGGCCCTGACGCCCCAGCTGCCCGTGAGGGCCCACCGGCCgctttgcctgtctgtctcctcCGACAGCAGCGGCAGGTTCCGGGCTCTGGAGTCACAGGACTGGAAGAACAACCTCAAAGCACAGATGGAGAAGGCCCACAGTGCGGGAGCAGCCAGCAGCACCGGCTCTCTGGAAAGAGCCTCCCTGTTTTGCGCTTCAGGCTCCAACACCAGCTCCAACCTGTCCAGCCCAGTGGAGACCCTGACCAAAAGCAAGTCGTCCAGCCGCTTCTCCCTGTTCTCCCCCCCCTGGAACAGCAGCTCTGAATCGGACTCCAACCCACCGTCCCGGTCGGGCTCCAAGAAGCTGCGCAACTACAGCAAGAGAGGAGGGagcaaaggagaggaggccctGGAGGCCCAGCAGAGCATCCCGGAGCACTTCCACTACTCGGAGCCCGTCATCTCCAAGGTGACGGACTACATCTACGTGGGGAACCTCAACGCAGCCTACAGCGGCCGCATCCTCTGCCGCAACAACATAGACAGCATCATTGACATGAGCAGCCTGCCCGGCGAGCAGCACGTGTGCCTCATCCCCTGCACCTGCTCCCGGGGCACCAAGCACAGCTGGTCACGCCTCAAGGTGGACATCAGCGGCCTGTCCAACGGCGAGAACGTGCCCCTGAAGCAGCGCTGCTTTGACGACATCAACGAGTGCATCGATGCCTCCACTGAGAAGCGCAAGAGGGTGTTGATCCACTGCCGGGATGGCTATTCACTGGCCCCCACCTGCATAATCCAGTACCTCATGGTGAAGCAAAATATGAGGCTGATCGCTGCCTATGAGTTCCTGAGGGCCAAGTACCCAGTGAACATCAAAGAGTGCCATAAAAACGTGCTGGTCAACTTGGAGAAGTCGCTGAGGCCGGGTGGTAATGTTGATCCAGAGTGTTTCAAGCAGGCAATTTCACGGAAAATGGCGTGGACCTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107758757

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007280 True 1014 mRNA 0.59 2 10035541 10037117

Neighbor

gene id symbol gene type direction distance location
AMCG00007279 NA coding downstream 3858 10025484 ~ 10031683 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 92317 9939191 ~ 9943224 (-)
AMCG00007274 ush1c,LOC106561052 coding downstream 243374 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 285499 9690273 ~ 9750042 (-)
AMCG00007271 kcnj11,LOC106561047 coding downstream 348278 9686106 ~ 9687263 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 12064 10049181 ~ 10056129 (-)
AMCG00007291 NA coding upstream 54196 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 124335 10161452 ~ 10186176 (-)
AMCG00007294 sirt3 coding upstream 182198 10219315 ~ 10228702 (-)
AMCG00007296 NA coding upstream 211160 10248277 ~ 10260107 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 394712 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 410663 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 436387 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 598272 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 850712 9181018 ~ 9184829 (-)
G22513 NA non-coding upstream 48643 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 336622 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 509879 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 574072 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 591231 10628348 ~ 10631934 (-)
AMCG00007282 NA other downstream 34376 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 572204 9457488 ~ 9463337 (-)
G22200 NA other downstream 1639317 8393196 ~ 8396224 (-)
G21942 NA other downstream 2528666 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2693200 7324424 ~ 7342341 (-)
AMCG00007299 NA other upstream 115363 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 150191 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 227928 10265045 ~ 10272695 (-)
G22838 NA other upstream 3314400 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3908526 13945643 ~ 13946065 (-)

Expression


Co-expression Network