AMCG00007281 (LOC105900426,LOC103035847,LOC108428822)


Basic Information

Item Value
gene id AMCG00007281
gene name LOC105900426,LOC103035847,LOC108428822
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10049181 ~ 10056129 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007281
ATGGCTGTACTAACCAAATCCAAAACTAACAGTACCAGTCACAGTCCTGCTACAGTCACACCCACTAAACCCTTTAACACCACCACTACTGCTGCCCCCGACTTCATCAATCAGCTGCTAAACAAAATTCCATTGCCGAGATGGGCTATTTACGCAGTTGCAGCTGCCATAGCCCTCATCTTTGTAATCTGCATTCTCTGCATTTGTGTAAAATGCTGCTGCcgagggaagaaaaagaagaagaagaagacagaTGAGCAGATCAACCTGAAGGGTGTAAATGGCTCCACCACAGCCAACTTGGTCCAACCAGATGTGGATGATGTGGACTATGGCTCGGCAGATAAACCAAGGGGAAGGTTGCTGTACTCGCTGGATTACAATACGCAGAGCTCAGAGCTCACAGTGGGAGTAAAGGAAGCTACAGAGTTGAGAGCTATGGACATTGGTGGAACCTCTGATCCCTACGTCAAACTGTATGTGCTCCCCAACAAGTCAAAGACATTCGAGACCAAGGTGTTTCGCAAAACTCTCAACCCGACCTTTAATGAGCAGTTCAAATTCCAGGTTCTTCAGGCAGAACTCAATGAATCTACATTGGTAATGCAAGTGTATGACTTCAATAGATTTTCTAAGCACGACATCATGGGAGAACTGAGACTGCAGCTCAGCGCTGTCGACTGGAACCACGTGATTGAAGAGTGGAAAGACCTAAATGAGGCATCTAAATTtgagCAAGAGAACCTGGGGGATATCTGCTTCTCTTTACGATATGTTCCCACGGCCAGCAAACTGACTGTCGTCATACTGGAGGCTAAGAATCTGAAAAAGATGGACACAGGGGGCTTTTCAGatcctTTTGTGAAGGTGCAGCTAATTTTGGACAAGAAGaagtggaagaaaaagaaaacctctgtgaaaaagaaaacattaaacccTTATTTCAATGAATCTTTCACTTTCGATGTGTCGTTTGATCAAATACAAAAAGTGCAggtggtgatctctgtgtgggacCACGACAAGATAAGCAAAAATGATGCCATTGGGAAGATTTATCTGGGCTGTGATGCCACAGGAAACCAGCTGCGCCATTGGGCAGACATGCTGTCCAATCCCAGGAGGCCAGTTGCCCAGTGGCACTCGCTGCTCTCCACAGAACAAGTAGATTCTACTTTGGCATTAAAACACTCTGTGAAAATACCcttcacaaacaaaacattttaaagtcagTATTTCCAATAGGATTGTTCTTATTTGCTTTTGGGTGGCATTTACTTTTCCCCATGGTCTACACTTCAAAGTACAAAAGGCACCACTGCTGAAGAACTGAATGTCTGACTTAACTTGGTCCATGTCTGAGAATAACCTTCACCCCAAAGTCAAATTCAAAGGTTTGGAACAACCCCAAATTCTGTGAAAGTGTAATCACTTGGCCTCTTTGCCCACTGGGCTGCAATCAATtctgcagtttttttcttcctggtgCCATATTTTAGCACTTCTAgctttttggttgttgttatCCCTTGTAATGTACTTAGGTTGTCCTTTCAAATTTCAGAAATAACTTGTTGTATGTGCAACCCTTATCTGATTTCTCTATTGAGTATATTAATTCaatatacatgaatatatttGAATCTTGTTACGGACCagtcttttaaaa

Function

NR:

description
PREDICTED: synaptotagmin-1-like

GO: NA

KEGG:

id description
K15290 SYT1; synaptotagmin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007281 True 1669 mRNA 0.43 9 10049181 10056129

Neighbor

gene id symbol gene type direction distance location
AMCG00007280 LOC107758757,LOC107549278 coding downstream 12064 10035541 ~ 10037117 (-)
AMCG00007279 NA coding downstream 17498 10025484 ~ 10031683 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 105957 9939191 ~ 9943224 (-)
AMCG00007274 ush1c,LOC106561052 coding downstream 257014 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 299139 9690273 ~ 9750042 (-)
AMCG00007291 NA coding upstream 35184 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 105323 10161452 ~ 10186176 (-)
AMCG00007294 sirt3 coding upstream 163186 10219315 ~ 10228702 (-)
AMCG00007296 NA coding upstream 192148 10248277 ~ 10260107 (-)
AMCG00007297 NA coding upstream 257462 10313591 ~ 10319631 (-)
G22505 NA non-coding downstream 4866 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 408352 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 424303 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 450027 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 611912 9417768 ~ 9437269 (-)
G22513 NA non-coding upstream 29631 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 317610 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 490867 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 555060 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 572219 10628348 ~ 10631934 (-)
AMCG00007282 NA other downstream 48016 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 585844 9457488 ~ 9463337 (-)
G22200 NA other downstream 1652957 8393196 ~ 8396224 (-)
G21942 NA other downstream 2542306 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2706840 7324424 ~ 7342341 (-)
AMCG00007299 NA other upstream 96351 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 131179 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 208916 10265045 ~ 10272695 (-)
G22838 NA other upstream 3295388 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3889514 13945643 ~ 13946065 (-)

Expression


Co-expression Network