AMCG00007283 (tnnt3b,LOC105906454,LOC107703302,LOC107742575)


Basic Information

Item Value
gene id AMCG00007283
gene name tnnt3b,LOC105906454,LOC107703302,LOC107742575
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9939191 ~ 9943224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007283
AGACCCAGTGCACCAAAGATCCCTGATGGGGAGAAGGTGGACTTCGATGACATCCAGAAGAAACGTCAGAACAAAGACCTTATAGAGCTGCAAGGTCTGATTGATGCTCACTTTgagcacagaaagaaagaagaggaggagCTCATTGCCCTCAAAGACAGAATTGAGAAGCGTAGAACAGAGAGATCAGAGCAGCAGAGAATCAGAGCTGAGAAGGACAAGGAGCGCCAGGCGAGACGTGAGgaggagaggctgaaaagggaggaggaggaccaGAAGAAGAGAGCTGATGAAGATGCCAAGAAGAAGAAGGCTCTTACCAGCATGGGTTCTCAGTACAGCAGCTACTTGGCCAAGGCTGACCAGAAGAGAGGCAAGAAGCAgactgagagagaaaagaagaagaagatccTGGCAGACAGACGCAAGCCTCTTAACATTGATCATCTGAGTGAGGATAAACTGAAGGAGAAGGCCAAGGAGATGTGGGACTGGATGCACAGCCTGGAGTCTGATAAATTCGACTTTGGTGAGAAGCTGAAGAGACAGAAGTATGAGATTATAGCACTACGTGGCAGAGTGGAGGAGCTCAGTAAATTAAACCGCATTGATGAGCTGCAGAAG

Function

symbol description
tnnt3b Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Acts upstream of or within sarcomere organization. Predicted to be part of troponin complex. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 2B and distal arthrogryposis type 2B2. Orthologous to human TNNT3 (troponin T3, fast skeletal type).

NR:

description
PREDICTED: troponin T, fast skeletal muscle isoforms-like

GO:

id name namespace
GO:0006942 regulation of striated muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12046 TNNT3; troponin T, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007283 True 624 mRNA 0.49 8 9939191 9943224

Neighbor

gene id symbol gene type direction distance location
AMCG00007274 ush1c,LOC106561052 coding downstream 147024 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 189149 9690273 ~ 9750042 (-)
AMCG00007271 kcnj11,LOC106561047 coding downstream 251928 9686106 ~ 9687263 (-)
AMCG00007272 ext2 coding downstream 256112 9644435 ~ 9683079 (-)
AMCG00007269 NA coding downstream 427852 9495648 ~ 9511339 (-)
AMCG00007279 NA coding upstream 82260 10025484 ~ 10031683 (-)
AMCG00007280 LOC107758757,LOC107549278 coding upstream 92317 10035541 ~ 10037117 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 105957 10049181 ~ 10056129 (-)
AMCG00007291 NA coding upstream 148089 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 218228 10161452 ~ 10186176 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 298362 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 314313 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 340037 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 501922 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 754362 9181018 ~ 9184829 (-)
G22505 NA non-coding upstream 89904 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 142536 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 430515 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 603772 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 667965 10611189 ~ 10612988 (-)
AMCG00007267 NA other downstream 475854 9457488 ~ 9463337 (-)
G22200 NA other downstream 1542967 8393196 ~ 8396224 (-)
G21942 NA other downstream 2432316 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2596850 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3885127 6007640 ~ 6054064 (-)
AMCG00007282 NA other upstream 16838 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 209256 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 244084 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 321821 10265045 ~ 10272695 (-)
G22838 NA other upstream 3408293 13351517 ~ 13352073 (-)

Expression


Co-expression Network