AMCG00007289 (bet1l,LOC107740886)



Basic Information


Item Value
gene id AMCG00007289
gene name bet1l,LOC107740886
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10187308 ~ 10190204 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00007289
CTGACTGGAATAGAGGTAAAAAAGTGGACACGTAGTCAAAATTAAGTAGTCTTTTATTTGTTAACCTAAATCATTTGATTAATCTTTATAGAAACCGAAATGTGTCTTCTTTGATAATCTTTGAAAAGTAATTGGTGACACAGTTGGTATAGAGAAGATGTGCAGTAAGGAAATACTTTTCTACTGAAACTAAGTACATCTTTACTGCGACTCTTTCATATTTTCCAACTTAACGAAATGGCTGACGATAAATGTCAAATCCGAGCTGCAATACGCAAGGGTTGCTCTGTTGATGATTGAAAACTGGAGAAAGCAGCCAACACGTTTCTTATAGGTTTGATAGTGTCCATGTAGTAAGATGGTAAACCTCTGCTTCTTTCTCGTTATGTGCTCTTGTGCCGTCATAAGGACATGGCTCTGGGGCGGTGGATGAGATGTTGGATGCCGAAAACAAGCTTTTGACCGAGAACCTAGCTACTAAAGTTTCCAGACTAAAATCgTTGGCCTTTGATATAGATAAAGACGCGGAAGAGCAGAATTCATATCTTGATGGCATGGATTCAAACTTTTTGAGTGCCACGGGCCTCCTGACCGGAAGTGTGAAGAGGTTCTCTACGATGGTTCGATCTGGAAGGGACAACCGGAAAATACTGTGCTACGTTTCAATTGGACTGGTCTTGgtttttttcttactttacTACCTGGTCTCCAGGACACAGACTTAGAAAGGCAACAGGgaaatcatattttgttaatcctCCATAGTCACTAGGACTGAAACAAATCTCAGTTATATgagaagtttaaaaacaaaatcaaaaacacttTGCTTTATTAACATTCATGATAAGTTGATGACACCCTTCGACCCCcagatatattgtttttttaatatgggaGACAAAGATTTCTGATACTGGTTTACTTCCTTTGTGCTTTTGACTTTAAACCTTGTCTTGGAAAGTAGAATTAAGTGTGTGATGTCAGAATTCTTGATAGTGGTGTTCTCTTGGGGGgtgtttattactttttttgcaCATGTGaaactttaatatatttaatatcttgAGATTTTAAGACCTGGTCGATTAAGACACTGAAGGGTTCCTGTAATGCTTATTTTTCTTTCGAGATCACCTGGATTTTTCTGGGAGGAATGCCAAATCCAAGTATATCCTTATGGTGCACAAGTGCGTCCCGGGGGGGTGGGAGTGTCAAGCTGCTTTACCTATGAGTTAAGGGGAGATGCACTGTGAAGAAGATAAGGGTTTCTTTACCCCCCTATTATAATATGCACTATGGGCAaagttgcttttaattttttttgtatttatattttccattccTGCTTCCAACTGTAGATATTTGCAGCCTTCTAGTTTACTGTAAATGATAAACTgaaacaagttttattttggtgttttttttttttgtttgtttgttttattaatgcatttgctGTTATGAATTGAAGATTATCCCAGTGTTTTCAAGTTTCATTCTGATAAAAGACACTGATGTTCTGGAGCAAACAACCCATTACCAAGAGGACATGTTCCTTAGGTTTTActttattacaataatacaaaataattcacttggttctttcattatttttatatgccTTTTCTCAAATGATAATGATTGATCACAGTTTTTTGAAATGGGATTGAAATGTTATCATTCAGTAATGTCCAGTAGGGGGTgctttgtagaaaatgtaaagatCTCTGAGCTATCTACAGGcaaatatactttattaaaatacactatCCAAATAATCAATCTACACTACCATGCTCGTACCTCTGCCAATGGTCATAGGTAATAatggtacaaaaataaaatgggaccACTGCTTTGTGAATTTGTACTTGGCAGAATAAACTTCAAGGTACATTCACTCATCTCTCTATGATATTTATTGGTTAAATATTAACTATCCCTTTTCCCAACTACATAGTcgttttaaacatacaaaacccCCACAATGGcacatgtatattaatattacatgtgTATGAGAGGGGCTAATATTCTTTTGGTAACAATAACATTGAAAAAAGACCAGACATAAAgcttttttataattttgttttgtaagattTCATAGTATCTTTCAGAGGCTAAATGTGAGGTGCCATTGAATTGAATACATGCAGACAGTAGCTGGGTGAAAGACATTGCGATTATTGATTAATCCACTGTGTAAATAAGTATATTGGTACTTTAATTAGCATatccattttaatgtattattaaggttttgtaataaaaatctTGA
>TU28289
AAAGGAGGAAGTCAACAAACATGGCTGACTGGAATAGAGGACATGGCTCTGGGGCGGTGGATGAGATGTTGGATGCCGAAAACAAGCTTTTGACCGAGAACCTAGCTACTAAAGTTTCCAGACTAAAATCgTTGGCCTTTGATATAGATAAAGACGCGGAAGAGCAGAATTCATATCTTGATGGCATGGATTCAAACTTTTTGAGTGCCACGGGCCTCCTGACCGGAAGTGTGAAGAGGTTCTCTACGATGGTTCGATCTGGAAGGGACAACCGGAAAATACTGTGCTACGTTTCAATTGGACTGGTCTTGgtttttttcttactttacTACCTGGTCTCCAGGACACAGACTTAGAAAGGCAACAGGgaaatcatattttgttaatcctCCATAGTCACTAGGACTGAAACAAATCTCAGTTATATgagaagtttaaaaacaaaatcaaaaacacttTGCTTTATTAACATTCATGATAAGTTGATGACACCCTTCGACCCCcagatatattgtttttttaatatgggaGACAAAGATTTCTGATACTGGTTTACTTCCTTTGTGCTTTTGACTTTAAACCTTGTCTTGGAAAGTAGAATTAAGTGTGTGATGTCAGAATTCTTGATAGTGGTGTTCTCTTGGGGGgtgtttattactttttttgcaCATGTGaaactttaatatatttaatatcttgAGATTTTAAGACCTGGTCGATTAAGACACTGAAGGGTTCCTGTAATGCTTATTTTTCTTTCGAGATCACCTGGATTTTTCTGGGAGGAATGCCAAATCCAAGTATATCCTTATGGTGCACAAGTGCGTCCCGGGGGGGTGGGAGTGTCAAGCTGCTTTACCTATGAGTTAAGGGGAGATGCACTGTGAAGAAGATAAGGGTTTCTTTACCCCCCTATTATAATATGCACTATGGGCAaagttgcttttaattttttttgtatttatattttccattccTGCTTCCAACTGTAGATATTTGCAGCCTTCTAGTTTACTGTAAATGATAAACTgaaacaagttttattttggtgttttttttttttgtttgtttgttttattaatgcatttgctGTTATGAATTGAAGATTATCCCAGTGTTTTCAAGTTTCATTCTGATAAAAGACACTGATGTTCTGGAGCAAACAACCCATTACCAAGAGGACATGTTCCTTAGGTTTTActttattacaataatacaaaataattcacttggttctttcattatttttatatgccTTTTCTCAAATGATAATGATTGATCACAGTTTTTTGAAATGGGATTGAAATGTTATCATTCAGTAATGTCCAGTAGGGGGTgctttgtagaaaatgtaaagatCTCTGAGCTATCTACAGGcaaatatactttattaaaatacactatCCAAATAATCAATCTACACTACCATGCTCGTACCTCTGCCAATGGTCATAGGTAATAatggtacaaaaataaaatgggaccACTGCTTTGTGAATTTGTACTTGGCAGAATAAACTTCAAGGTACATTCACTCATCTCTCTATGATATTTATTGGTTAAATATTAACTATCCCTTTTCCCAACTACATAGTcgttttaaacatacaaaacccCCACAATGGcacatgtatattaatattacatgtgTATGAGAGGGGCTAATATTCTTTTGGTAACAATAACATTGAAAAAAGACCAGACATAAAgcttttttataattttgttttgtaagattTCATAGTATCTTTCAGAGGCTAAATGTGAGGTGCCATTGAATTGAATACATGCAGACAGTAGCTGGGTGAAAGACATTGCGATTATTGATTAATCCACTGTGTAAATAAGTATATTGGTACTTTAATTAGCATatccattttaatgtattattaaggttttgtaataaaaa

Function


symbol description
bet1l Predicted to enable SNAP receptor activity. Predicted to be involved in regulation of retrograde vesicle-mediated transport, Golgi to ER and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi trans cisterna. Human ortholog(s) of this gene implicated in uterine fibroid. Orthologous to human BET1L (Bet1 golgi vesicular membrane trafficking protein like).

NR:

description
PREDICTED: BET1-like protein

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08504 BET1; blocked early in transport 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00007289 True 2284 mRNA 0.35 3 10187308 10190180
TU28289 False 1909 TUCP 0.35 4 10187314 10190204

Neighbor


gene id symbol gene type direction distance location
AMCG00007290 NA coding downstream 1132 10161452 ~ 10186176 (-)
AMCG00007291 NA coding downstream 90607 10091313 ~ 10096701 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding downstream 131179 10049181 ~ 10056129 (-)
AMCG00007280 LOC107758757,LOC107549278 coding downstream 150191 10035541 ~ 10037117 (-)
AMCG00007279 NA coding downstream 155625 10025484 ~ 10031683 (-)
AMCG00007294 sirt3 coding upstream 29111 10219315 ~ 10228702 (-)
AMCG00007296 NA coding upstream 58073 10248277 ~ 10260107 (-)
AMCG00007297 NA coding upstream 123387 10313591 ~ 10319631 (-)
AMCG00007295 NA coding upstream 130136 10320340 ~ 10326821 (-)
AMCG00007302 NA coding upstream 171497 10361701 ~ 10372947 (-)
G22513 NA non-coding downstream 100925 10085760 ~ 10086383 (-)
G22505 NA non-coding downstream 142993 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 546479 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 562430 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 588154 9598692 ~ 9599154 (-)
G22619 api5 non-coding upstream 183535 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 356792 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 420985 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 438144 10628348 ~ 10631934 (-)
G22687 NA non-coding upstream 463970 10654174 ~ 10655530 (-)
AMCG00007282 NA other downstream 186143 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 723971 9457488 ~ 9463337 (-)
G22200 NA other downstream 1791084 8393196 ~ 8396224 (-)
G21942 NA other downstream 2680433 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2844967 7324424 ~ 7342341 (-)
AMCG00007298 NA other upstream 74841 10265045 ~ 10272695 (-)
G22838 NA other upstream 3161313 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3755439 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3791170 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 6047257 16237461 ~ 16314032 (-)

Expression



Co-expression Network