AMCG00007290


Basic Information

Item Value
gene id AMCG00007290
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10161452 ~ 10186176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007290
ATGGATGAGTCTGAATCGGCGACGAAGGGACTCGGCTTGGAGGAGGCGTCCGAAAGTGCGGCTGCTGTGCCGGGAGAGGGGGAGGACTCGGATACTGAATCGGAGGCCGAAGTATCAGCGATGACTGTAATGGGTGAACCGGGGCACATCGAGATTGGAGCCGAGTCCTTGCCGAACCCAGACGAGGCCGAGACGGCGTTTGCAGGAAAGTTTTCTTCTGCCTGGCTCGCACATCGCACGCATTGTGCAGTTGCAGAGGGAATGCAATGCAGTGCACAGCCTAAAGCTTTCCTCTGCAGTGTATTGATGCCCAGAACTCGTAGTGCCGTTTTTAACGAAGTGACCACAGTGACTGTAGCAGACGTACCGGGAACTGGAGATAATGTGTTCACAACATCTGTTGCCAATGCAGCGTCCATTTCTGAGCATGTTCTTACTGGACGGACTACTTTGCAAATCGGAGACACCCTGAACACACAGAAGGCCACTCTGATAGTGGTTCACACAGATGGCAGCATCGTGGACACATCTGGTTTAAAAGGGCCTGCTACCCCGATTACCCCAGGTCCTCAGACTCCATCCACCCCTATTACACCCGGCCCTGAGAAAGATGGAACGAAGTATAACTGGGACCCCTCAGTGTATGACAATGAACTGCCGGTCAGGTGCAGAAATACCAGTGGCTTGCTGTATAAGACCAGACTGGGCTCTGGTGGGAAGGGGCGCTGTATCAAGCACAACAACAACTGGTACTCCCCCACTGAGTTTGAAGCCATGTCTGGGAGAGCCAGTAGCAAAGACTGGAAGAGAAGCATTCGTTATGCAGGCAGGCCCTTACAGTGCCTGATCCAGGAGGGCATCCTGAACCCACACGCTGCATCCTGCACCTGTGCCGCTTGCTGTGATGACCTTTCCTTGTGCACCAAGAATGGGGAAGGGGCATCTTTCAGAGGGGAGAACATAAATATGaCTGGTCCTGTAAGACTGTTTGTCCCATACAAAAGGCGAAAGAAAGACAACGAGCAGCCAACTACGCCCGAGAAAAAAGAATCTCAGTCGCCAAAAAACATCACAACCTTTACAGTGTCACCCTCTGGGCAGATCACCACCTCAGGGACACTGACCTTCGACAGGACATCCACAGGTGACACCGCGACAATCATTTCAGAGAGCCCACCGCAGGCAGCCGTCTTCACTGGGGCAACAGTGTTGACGTCCCTTCCTGCCCTGGCAATGAGTCAATCGTTGCCGGCCAAAGCGGTGTCTCCGGGCCTGGTCAATGGTCTGGAGGTGAGCGAGCAGAGGACTTGGCTTTACCTGGAGGAGATGGCCAGCTCCCTCATAAACACCGCACAGCAGCTCAAGGTCCTCATCGAGCAGGCCAAGCAGGCCAGCTTGGCTAACCGAGAGGCAGCCCTGTCACAGGTTAAAGCGCCCTCTGAGAGGAAAGACcAAATGTGTGTAAACTGCGGCCGGGAGGCCATGAACGAGTGCACCGGATGCCACAAGGTCAATTACTGCTCCACGTTCTGCCAGAGAAAGGACTGGAAGGACCACCAGCACACCTGTGGTCAGCAAACCACAACCGTCTCTGTTCAGAGCGAGGAGGTTCAGAGTGCTGACATGGACATGGACAAAGTAAAAGTCTAGCACCAAGGTCGTCTGACACGAAGCTGAGCAACAACTCGTGTTCGTTTTAAGCTACAACATGCAGCCTGGTGTCTCTCTGAAGGTCTTCAGACTTACCAGGCCTGTTCGTCTCCTTGGCGACACCCCTGAAGATATTGTTTACCTTGTAGGGACTTGGCTAATACgttgtgttgttttctccttttacatgtatgttttgttttaaaatgttgtatgcgtttttgcttttttaaggaaaatatgtatattagcTTTGAAATCGAAAAGAGGAAGTCCTTAGAAATACTTGAAACTTTCctgttttgtactttgtttttaaaactgtgatGGAGTTCcatagaaaaaaactaaaactaaaaatagactagaaaaagagaaaagcgCATGTCAGCTTTGCAAATGAATGAATGCGCTGATGCTTACAGATAAAATGATGCTGCCACAACTTACCCTACTGCACATAAAGCGGTGCAGTATCAAGCTGTGTGTCGCACTGAGGGGATTTGTCAGAACATGCAAAGAAATGCTAGCGCTGTGATTTTAAAGCTCTTGCAGCTAGCAAGATGAGCTGTGAATATCTTACCTGCGTTTTGTTCTTTCAGTCCCATTTTATCTAATTTCAAAGACATACTGACCTGCTGTCAATAGTGAATttgaattattgatttaattatttactgatCATTGGTTTCTGAGAAACCTTTGTCTCTGTTATGTCAGTCATTCAGCAGGCTGCACTCCATTGAGCTCACAGCCCTGATGAAGAATGTTGCACCAATAAAATTGACATCCAAATTCAGAACCTCATTACTGTGTACTTTCACATGGTAGCATGGCAGTTTTTGTGTAGACGGGGACCACGTTAGTACTTGCAGGGACCTTAATCTTTCACAATAGTTCATTTGATGTACTTCGATGCATGTACAGATGCTGTTCTTTTAATCTTCAATGTTATGGATTGATACCTAGAAGATGTGCAAGTCAGTCATATTCTGCAGCAAAATGGAGAGAATCTCAGTGACCACAGTTTAAGATCCATccctgtttttgctttttaatgactGTTGACATGAGTATTGTGAAACAAATCCAGTATACATCCTCAGTTCTTAATATACATGAATACTACTGTCCACTGTAGTTAACTTTTAAAGCCATAATTCAACATTCAGCCggccctgtttttgttttagaggttttgattattttaaaaacaggaaaatgttttctgtataaaactatgaaatgcagaaataagTGTTGGAGGTTTTTATTATCTGGTTTGATGCTTTGTATCATTAATTACCTGAAGATTTAACATGagttgatttaattttctttttcatcccAACGGTAAGCAAAAATGTGTaaggcttttcttttctgttgtaTAATAATGCAGTTGAACTTTATACCTTACGCTGTTGCTGCTCCTGAATCCATAGTATCCTCATCTATTATGTTCCTGATAATACCTGGGATGTGAGAGGAAATGATTTTCACACAAGCAGTGTTTGAGCAACTAGTCtcttgtgaaaatgaaatgttattttcctaacagctgtttttccccctctacACTGCCAGCTACTGTCTGTTTCTAGACCCTGtagtaatgtgtgtgtacacaaTATTGTCTCTGAATGCAAAAAGATTTGTTAAAAACCAACCTGGCTAATGGCTTGATTCTTATTCAGTGCATTCTAAGAgggttttcttattttttttaatgtagtgggTGATGCCCATCTTATTTAGTTTCTACCTTGCTACTATTGCTACATCTactattatgtatgtatgtggtCTGATTCCCTGTTGTTTCTGTGTGACTTGCCATCctacaacaaaacaagcaaaacaacaagGCCATCAAAGctgtctgtttgacagataatCTGAGCAGAAACAGCCACTTACACAGACTTGGTATACCAGAGTCACACAGAAGAATGATGGGAATGGAAACTGTATCTGGGTTTGGAGTAGCTGTTTTATCAGAGCTGCTTCAGTTAGATTCATCTGATGTGTTAGTTTTGCCGTTTGTCCTCTGGGTTTGcagtctggaaaaaaaaaaaaaaaagtaatt

Function

GO: NA

KEGG:

id description
K23041 DEAF1; deformed epidermal autoregulatory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007290 True 3739 mRNA 0.45 12 10161452 10186176

Neighbor

gene id symbol gene type direction distance location
AMCG00007291 NA coding downstream 64751 10091313 ~ 10096701 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding downstream 105323 10049181 ~ 10056129 (-)
AMCG00007280 LOC107758757,LOC107549278 coding downstream 124335 10035541 ~ 10037117 (-)
AMCG00007279 NA coding downstream 129769 10025484 ~ 10031683 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 218228 9939191 ~ 9943224 (-)
AMCG00007294 sirt3 coding upstream 33139 10219315 ~ 10228702 (-)
AMCG00007296 NA coding upstream 62101 10248277 ~ 10260107 (-)
AMCG00007297 NA coding upstream 127415 10313591 ~ 10319631 (-)
AMCG00007295 NA coding upstream 134164 10320340 ~ 10326821 (-)
AMCG00007302 NA coding upstream 175525 10361701 ~ 10372947 (-)
G22513 NA non-coding downstream 75069 10085760 ~ 10086383 (-)
G22505 NA non-coding downstream 117137 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 520623 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 536574 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 562298 9598692 ~ 9599154 (-)
G22619 api5 non-coding upstream 187563 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 360820 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 425013 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 442172 10628348 ~ 10631934 (-)
G22687 NA non-coding upstream 467998 10654174 ~ 10655530 (-)
AMCG00007282 NA other downstream 160287 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 698115 9457488 ~ 9463337 (-)
G22200 NA other downstream 1765228 8393196 ~ 8396224 (-)
G21942 NA other downstream 2654577 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2819111 7324424 ~ 7342341 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1132 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 78869 10265045 ~ 10272695 (-)
G22838 NA other upstream 3165341 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3759467 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3795198 13981374 ~ 14033212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G76192 NA unknown NC_035904.1 CM008307.1 24258509 ~ 24260506 (+)