AMCG00007292


Basic Information

Item Value
gene id AMCG00007292
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10343702 ~ 10357605 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007292
ATGGAGCACTCCTTGGCCTGCCCTCCACTCTACGTGTCTCCGTGCAGCTCCGTATCCCTGCTCTGGGTGCTCACACTGAAGATGGGCTCCTTCCGCCGGCCTCGTCCCCGATTCATGAGCTCGCCAGTCCTGACCGACTTGCCCCGATTCCACGCCAGCACCCAAGCCATCCAGCTTAACAACACCACAGTGTGGAACAGTGTCCATTCAGCAGTGATAAAAGTGTTCCAAGGTGGAGGGTTACAGACCAACGAACTTTACACCTTGAATGAGAGCATCagGTGGCTTCTGAAGACAGAGTTGGGATCTTTCATCACAGAGTATTTCCAGAATCAGCTCCTCAACAAAGGGCTGGTGCACATCACAGAGAAGATCCAGCTGTATGAAGAGATCCTCCCCACACTGCAGGCCATCTTCTACCCAGTCCAAGGTCAGGAGCTGACGGTCAGACAGATGGCTCTGCTGGGTTTCAGAGACTTGGTCCTCCTGAAACTGCCCTTGGGAGAGCTGCTCCCCGGGCTAGATGCCCAGACCCCTCCTGCCATCACCCAGATGCTGCTCGTCCTGCAGGGAATTCATGAGCCCAGCGGCCCCAGTGAAGAGTACTACCAACTGGAGAAGCTCGTTGAAGTCATGGTGTCTCCATACCTGGGAAACTTcctggacaaaaacaaaacctcttgCTTTCTAAGTGGACGGGCATCCCGATCAAAAGCTATGCGCTCACTGCATTATGGGCCGGAGATTATGGTTACCCAGCATGCTCCGGATTCATCTCTGGCACCCCTTGTGGAGCAGGAAGGCGAGGCATACCTGGAGAAGGTGGGCGGGGTCCGACGCCACACTGTAGCCAATGCGCATTCTGACCTGCAGCTGCTCACTGTTGCCACCATGATGCACTCTGGGATGGTGGAGGACAGTACCATGGGGCAGCGGCATTTTGTCAGTGAGCCCCATATTGGAGAGTCTCCTGACGGCGTGGTCCTGATATCGCTGCAGGGCTCCTCTGAACTCAGCTGTGCCCCTCCCAGCTAGGACAGCACCAGCAGACCTATTAACTGAACTTACACGAGGCCAATGGGCTCGGCCCCAACACTGTCACAGCAGATGAAAGGTGTAGATCAGAGACGTGCAATGCCTATCCGATTGGTAAATGTCCGATGGCTCCAAGGACCTGATCTAACTGTTTCTTGTAGGATGCTAATGTCTTAACAGCTGCAACATGCCACTCTATCTTTTTCCATTGTGCCTGGCTCCTTGCAACAGTGTGTCGTTTCCTTTCCAGATTTGCCTTACAGTTTTGATGTCTGTGCTGAGGTTGGAGTTAAGACTGTGTGCtggttttttattgtattttaagcaTTCTTTGTTGTAGGCCAAAGAGCTGAAATTCTCTGCGTCTCCATGCCATACCTCTTACTATGGGAATGGATGTGGAACAGGCATGTTTGGGAACTTTCTTTGCATCAGGAAAATTACAGTGAtgatttcaatgtattaatGCTGCCAGACATAGAGCTGCTTAACTTCACAGAGGCTGAAGGATGGCAAGTTTGGGATAGAATATGCCAATACAAGCATGGCAACTTTCAGATGattcaaattgaaatggaaGTAAATTCATCAATGGCCTGAGGGTCCACTGAACAAAGCTGAAGGAAAACCCATGTAGGGAGTTGCATCTGCTATCCCTATAAAGGTGTACAAAAGGAGCACGAAGTTGGTGGTCCTAACTAAAAGTCTTATTTCTTggctaacattattattaccGTATTTAATTCAAACCGAATGTCCAGAGGATAAGTCATATTATggaacaggaaaaataaataaattaaaaattaagtcATGCCCCAGGCACTAGGACAGAGTACTGTaaagttttccattttcttttgctAGGTCTGAATCAGACACTCAACTTCAACATCTGATTCCGGTTATCGGGTAAATGCCAGAGCAAGTCTGATTTACACCAGCTGGTACCAAACCTATTTCAACTGGCATTTTGCACCCATTCTTTATTCTGGTCtttacactgttttttttttttttggggggggg

Function

GO: NA

KEGG:

id description
K20411 PRR5; proline-rich protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007292 True 2064 mRNA 0.49 9 10343702 10357605

Neighbor

gene id symbol gene type direction distance location
AMCG00007293 NA coding upstream 32885 10295558 ~ 10310817 (+)
AMCG00007285 psmd13 coding upstream 107136 10229064 ~ 10236566 (+)
AMCG00007288 NA coding upstream 128435 10202378 ~ 10215267 (+)
AMCG00007284 NA coding upstream 189521 10138737 ~ 10154181 (+)
AMCG00007287 ctsd,LOC107382058,LOC107686244 coding upstream 257556 10073788 ~ 10086146 (+)
AMCG00007301 api5,LOC104957150 coding downstream 16365 10373970 ~ 10383283 (+)
AMCG00007300 LOC106562579,LOC106593862,LOC106597634 coding downstream 36560 10394165 ~ 10420911 (+)
AMCG00007303 NA coding downstream 176552 10534157 ~ 10577164 (+)
AMCG00007304 NA coding downstream 219641 10577246 ~ 10609015 (+)
AMCG00007308 NA coding downstream 270745 10628350 ~ 10654989 (+)
G22596 NA non-coding upstream 21844 10320469 ~ 10321858 (+)
G22528 NA non-coding upstream 102294 10152489 ~ 10241408 (+)
G22417 NA non-coding upstream 698955 9642597 ~ 9644747 (+)
G22373 NA non-coding upstream 851035 9488712 ~ 9492667 (+)
G22364 NA non-coding upstream 947222 9396221 ~ 9396480 (+)
G22652 NA non-coding downstream 269069 10626674 ~ 10685068 (+)
G22712 NA non-coding downstream 753738 11111343 ~ 11111723 (+)
G22720 NA non-coding downstream 872220 11229825 ~ 11230393 (+)
G22730 NA non-coding downstream 1154548 11512153 ~ 11522358 (+)
G22738 NA non-coding downstream 1183378 11540983 ~ 11541524 (+)
AMCG00007278 NA other upstream 378435 9936920 ~ 9965267 (+)
G22372 NA other upstream 843974 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 1632391 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 1892120 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 1947460 8367436 ~ 8396242 (+)
AMCG00007307 clg19h11orf96 other downstream 253591 10611196 ~ 10613104 (+)
AMCG00007337 NA other downstream 4121068 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 4919106 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 5009056 15366661 ~ 15379965 (+)
AMCG00007379 NA other downstream 6266785 16624390 ~ 16662700 (+)

Expression


Co-expression Network