AMCG00007294 (sirt3)


Basic Information

Item Value
gene id AMCG00007294
gene name sirt3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10219315 ~ 10228702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007294
CGGGAGGTCGCCTGAGCTGTTGTCACTTGCAAATAACCATTTATTCAAGACGGGTTTTTgttatcatatttaaaaatagtatacaccgttttaaaatattttgttaattattcgTTTTAAATCTGGTTATTATGAACACAAAAGATGACCTTTTCCATGTCCAAGTTGCTTAGATTTGTATACCACCACAAAGTCAAACATAGCTCAACTTTAGGAATTGCATCATTGAAAGtACCCTATGGCCAAATACATACAGGAGTCACCCCTAAGACAACAGTCTTCCTCCAGCATAATGGCAACTGTTTTAGAAGCTGTATATATCTACAGCCACAGATATCTTGGTATAGTAGGAGATGTTTTTCGACCTGCCGCATGGTACGAGGGCTGTTTGGAGGGAGTGGCAGTGTCCAGAAGCAGCAGACTTTGGAAGACATTGCAAAGCTTGTACAAGAGCAGGAATGCCAGAGGATTGTGGTGATGGCTGGAGCAGGTATAAGCACACCTAGTGGGATCCCAGACTTCAGGTCACCTGGAAGTGGTCTGTATGATAATCTCCAGCAGTACAATCTACCCTATGCTGAAGCCATATTTGAGATCAACTACTTCCACCACAATCCAAAACCATTCTTCGCCCTGGCCAAAGAGCTCTATCCAGGCAATTACCAGCCTAATCTAACTCACTACTTCATCAGACTCCTACATGACAAAGGACTTCTACACAGACTGTACACCCAGAACATAGATGGCCTGGAGAGACTGGCAGGCATTCCTCCAAATAAACTGGTGGAAGCCCATGGGACCTTCGCCACGGCAACTTGCACAGTCTGTCGGATGTCATTCCCAGGAGATGCCCTGAGAGCAGATATAATGGAGAGTAAAGTCCCACAATGCCCCACCTGTAGGGGGGTTGTCAAGCCTGacattgtgttttttggggAGGAGCTCCCGCAGCAGTTCTTTCTGTATCTGACTGACTTCCCTCTGGCTGACCTGCTCATTGTCATGGGAACCTCCCTGGAGGTGGAGCCCTTTGCCAGTTTGGCCGGCGCAGTACGGGGCTCAGTGCCTCGGGTTCTCATCAACAGAGACCTGGTGGGGCCCTTTGTGTCCCGCTCGCCCCGGACCAGCGACGTGGTGCTGCTGGGGGACGTGGTGGCCGGGGTGCAGAGGTGTGTGGACACTTTGGGATGGACAGAACAACTGGATAAGCTTATCCGCACAGAAACTGAAAAGcagaagagaagagaagagggaggagaagagaagaaggaggagTAAAGACGCTGAAGGTCTTTCCCAGGGGTCTGCCTGTCTCCGAAGGAGGTATTCAAACTACCGGCTGACATTAAATGCCTCTGATTGCCAGCAGGAAGTCATGTGATTTTCACTTTATGAATTTGCATGGCCATAGAGAATTAAAGTAGTAGATTAAATTACATCCAATGATTGTGGTGGTTTAAAAAGGCTGTGTTTgacaatatatttgttgttgttgcaggtCCTCTGGTGTACAGATGAGCATAAGGCTTGTAATATAGGTTGAAGTTGAAGGATCCTTTTTAATTGGTCATATACTCACTCTTGTTTGCACAAATTTGAACAAATAAGCTAAAGCTGTGTCATTTTTCATAGATCAGGTCTCTTGTATGGATGAAATGGGGAGAATGTGTCAATTTGTATATGACTATACTTTGAATAAGGATGAATCAATCAAAATAGTTGTGAGAAAATGTAGATTATATAAATAGATGTAATTAACTCATGCCAAACTAGTGTCTCACTtctcaataaatattatttaccCTG

Function

symbol description
sirt3 Predicted to enable NAD+ binding activity and NAD-dependent histone deacetylase activity. Predicted to be active in nucleus. Is expressed in liver and retina. Orthologous to human SIRT3 (sirtuin 3).

NR:

description
NAD-dependent protein deacetylase sirtuin-3, mitochondrial isoform X2

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11413 SIRT3, SIR2L3; NAD+-dependent protein deacetylase sirtuin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007294 True 1806 mRNA 0.44 8 10219315 10228702

Neighbor

gene id symbol gene type direction distance location
AMCG00007290 NA coding downstream 33139 10161452 ~ 10186176 (-)
AMCG00007291 NA coding downstream 122614 10091313 ~ 10096701 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding downstream 163186 10049181 ~ 10056129 (-)
AMCG00007280 LOC107758757,LOC107549278 coding downstream 182198 10035541 ~ 10037117 (-)
AMCG00007279 NA coding downstream 187632 10025484 ~ 10031683 (-)
AMCG00007296 NA coding upstream 19575 10248277 ~ 10260107 (-)
AMCG00007297 NA coding upstream 84889 10313591 ~ 10319631 (-)
AMCG00007295 NA coding upstream 91638 10320340 ~ 10326821 (-)
AMCG00007302 NA coding upstream 132999 10361701 ~ 10372947 (-)
AMCG00007309 NA coding upstream 523536 10752238 ~ 10753836 (-)
G22513 NA non-coding downstream 132932 10085760 ~ 10086383 (-)
G22505 NA non-coding downstream 175000 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 578486 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 594437 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 620161 9598692 ~ 9599154 (-)
G22619 api5 non-coding upstream 145037 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 318294 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 382487 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 399646 10628348 ~ 10631934 (-)
G22687 NA non-coding upstream 425472 10654174 ~ 10655530 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 29111 10187308 ~ 10190204 (-)
AMCG00007282 NA other downstream 218150 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 755978 9457488 ~ 9463337 (-)
G22200 NA other downstream 1823091 8393196 ~ 8396224 (-)
G21942 NA other downstream 2712440 7499447 ~ 7506875 (-)
AMCG00007298 NA other upstream 36343 10265045 ~ 10272695 (-)
G22838 NA other upstream 3122815 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3716941 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3752672 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 6008759 16237461 ~ 16314032 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location